New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5567397	39 (0.740)	4 (0.080)	4/242	NT	9.1%	coding (89/1899 nt)	mutL	DNA mismatch repair protein MutL
	?	NC_002947	= 5567439	43 (0.850)					coding (47/1899 nt)	mutL	DNA mismatch repair protein MutL

TGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5567245‑5567397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGGGATGATGGCAG  <  NC_002947/5567439‑5567292                                                                                                                                                                                                                                                                                                               TGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTG                                                                                                                                                          >  5:48654/1‑149  GGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGG                                                                                                                                                         >  7:259865/1‑149                                                      TCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAA                                                                                                     <  6:150442/149‑1                                                         TCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGA                                                                                                  <  3:84760/149‑1                                                                                                                             CAGGCTGTTTTCCAGCAGTTCCTTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGC                                                                                                        >  1:272586/1‑75                                                                                                                             CAGGCTGTTTTCCAGCAGTTCCTTGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGC                                                                                                        <  2:272586/75‑1                                                                                                                                                    TGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGA                                            >  7:84417/1‑112                                                                                                                                                    TGGCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGA                                            <  8:84417/112‑1                                                                                                                                                      GCCAACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGGGATGATGG     <  3:330294/149‑1                                                                                                                                                         AACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGGGATGATGGCAG  >  3:215118/1‑149                                                                                                                                                                                                                                                                                                               TGGCGTGTCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5567245‑5567397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaACCAGATTGCCGCCGGCGAGGTTGTCGAGCGGCCGGCGTCTGTGGCCAAGGAACTGCTGGAAAACAGCCTGGACTCCGGTGCCCGGCGCATCGATATCGAAGTCGAGCAGGGCGGCGTCAAACTGCTGAAGGTGCGGGATGATGGCAG  <  NC_002947/5567439‑5567292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.