New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5567397 | 39 (0.740) | 4 (0.080) | 4/242 | NT | 9.1% | coding (89/1899 nt) | mutL | DNA mismatch repair protein MutL |
? | NC_002947 | = 5567439 | 43 (0.850) | coding (47/1899 nt) | mutL | DNA mismatch repair protein MutL |
CTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACC > NC_002947/5567292‑5567587 | cTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTt > 3:215118‑M2/1‑148 (MQ=255) ccATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggc < 3:330294‑M2/149‑5 (MQ=255) tcatcCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAg > 2:260771/1‑149 (MQ=255) ccGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCcgc < 1:32610/148‑1 (MQ=255) cGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCAGCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCgg < 4:85816/149‑1 (MQ=255) gcagTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGagcagc > 4:320996/1‑149 (MQ=255) cagTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCt > 5:135871/1‑149 (MQ=255) gTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGa < 1:260771/149‑1 (MQ=255) cgccgcCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTcgc < 1:158891/149‑1 (MQ=255) gccgccCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTcgc > 6:231310/1‑148 (MQ=255) gccgccCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTcgc < 5:231310/148‑1 (MQ=255) cccTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAAcc < 1:147986/149‑1 (MQ=255) cTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGc > 6:47573/1‑149 (MQ=255) cTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAc > 5:102512/1‑149 (MQ=255) tCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggcca < 8:84417‑M2/112‑7 (MQ=255) tCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggcca > 7:84417‑M2/1‑106 (MQ=255) tCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGCTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑t > 3:41908/1‑149 (MQ=255) cTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑tcatc < 6:102512/149‑1 (MQ=255) ttCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGc > 6:133188/1‑109 (MQ=255) ttCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGc < 5:133188/109‑1 (MQ=255) ttCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑tcatca > 3:175937/1‑149 (MQ=255) gATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCAtt < 4:330294/148‑1 (MQ=255) atCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTgcgc > 6:226592/1‑149 (MQ=255) cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCgg > 7:58982/1‑149 (MQ=255) cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCgg > 8:185122/1‑149 (MQ=255) cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCgg < 5:47573/149‑1 (MQ=255) cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCgg > 7:39642/1‑149 (MQ=255) ggAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCggg < 7:185122/149‑1 (MQ=255) gAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGt < 8:58982/149‑1 (MQ=255) ggCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGACCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATc > 1:237790/1‑148 (MQ=255) ggCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATc > 1:7086/1‑147 (MQ=255) gCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCgg < 5:121778/139‑1 (MQ=255) gCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCgg > 6:121778/1‑139 (MQ=255) gCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAg < 5:226592/149‑1 (MQ=255) tCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcgagcagggcggcgtcaaactgctgaaggtgcggga < 3:84760‑M2/149‑98 (MQ=255) tCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCtt < 4:175937/148‑1 (MQ=255) ttGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcgagcagggcggcgtcaaactgctgaaggtgcgggatga < 6:150442‑M2/149‑101 (MQ=255) gCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctg > 1:272586‑M2/1‑46 (MQ=255) gCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctg < 2:272586‑M2/75‑30 (MQ=255) cacaGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGACCAACCTTCAGCTCATc > 7:46423/1‑149 (MQ=255) acaGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCa < 7:133081/141‑1 (MQ=255) acaGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCa > 8:133081/1‑141 (MQ=255) gccgg‑ccgCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTc < 3:320996/149‑1 (MQ=255) gg‑ccgCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAgg < 8:39642/149‑1 (MQ=255) gg‑ccgCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAgg < 6:135871/149‑1 (MQ=255) tCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTATATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGt < 6:239804/147‑1 (MQ=255) tCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTATATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGt > 5:239804/1‑147 (MQ=255) tCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGtt > 4:180100/1‑148 (MQ=255) gACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGGCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGCGGCACTGGCCAACGTTGAGCTGGTCGGTCGTCCGGCTGTTgtt > 8:249674/1‑147 (MQ=255) gACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGACCAACCTTCAGCTCATCGGTCTTCAGGCTGTTg < 8:46423/147‑1 (MQ=255) ggcAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGc < 1:136088/149‑1 (MQ=255) ggcAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGc > 2:119163/1‑149 (MQ=255) ggcAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGc > 2:236568/1‑149 (MQ=255) tCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCcaca > 1:256774/1‑149 (MQ=255) tCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCacac > 6:170846/1‑149 (MQ=255) ggTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAGCCTTCAGCTCATCGGTCTTCa > 8:104180/1‑116 (MQ=255) gTTGGCCAGCCGGAAGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGAc < 1:119163/149‑1 (MQ=255) ttGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGAcc < 3:180100/149‑1 (MQ=255) | CTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAC‑TCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACC > NC_002947/5567292‑5567587 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |