New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 556739739 (0.740)4 (0.080) 4/242 NT 9.1% coding (89/1899 nt) mutL DNA mismatch repair protein MutL
?NC_002947 = 5567439 43 (0.850)coding (47/1899 nt) mutL DNA mismatch repair protein MutL

CTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACC  >  NC_002947/5567292‑5567587
                                                                                                                                                    |                                                                                                                                                     
cTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTt                                                                                                                                                      >  3:215118‑M2/1‑148 (MQ=255)
   ccATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggc                                                                                                                                                   <  3:330294‑M2/149‑5 (MQ=255)
      tcatcCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAg                                                                                                                                                >  2:260771/1‑149 (MQ=255)
           ccGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCcgc                                                                                                                                            <  1:32610/148‑1 (MQ=255)
            cGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCAGCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCgg                                                                                                                                          <  4:85816/149‑1 (MQ=255)
                      gcagTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGagcagc                                                                                                                                >  4:320996/1‑149 (MQ=255)
                       cagTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCt                                                                                                                               >  5:135871/1‑149 (MQ=255)
                         gTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGa                                                                                                                             <  1:260771/149‑1 (MQ=255)
                               cgccgcCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTcgc                                                                                                                       <  1:158891/149‑1 (MQ=255)
                                gccgccCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTcgc                                                                                                                       >  6:231310/1‑148 (MQ=255)
                                gccgccCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTcgc                                                                                                                       <  5:231310/148‑1 (MQ=255)
                                    cccTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAAcc                                                                                                                  <  1:147986/149‑1 (MQ=255)
                                      cTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGc                                                                                                                >  6:47573/1‑149 (MQ=255)
                                         cTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAc                                                                                                             >  5:102512/1‑149 (MQ=255)
                                          tCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggcca                                                                                                                                                 <  8:84417‑M2/112‑7 (MQ=255)
                                          tCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggcca                                                                                                                                                 >  7:84417‑M2/1‑106 (MQ=255)
                                          tCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGCTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACt                                                                                                           >  3:41908/1‑149 (MQ=255)
                                              cTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACtcatc                                                                                                       <  6:102512/149‑1 (MQ=255)
                                               ttCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGc                                                                                                                                               >  6:133188/1‑109 (MQ=255)
                                               ttCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGc                                                                                                                                               <  5:133188/109‑1 (MQ=255)
                                               ttCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACtcatca                                                                                                      >  3:175937/1‑149 (MQ=255)
                                                  gATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCAtt                                                                                                    <  4:330294/148‑1 (MQ=255)
                                                     atCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTgcgc                                                                                                >  6:226592/1‑149 (MQ=255)
                                                                      cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg                                                                               >  7:58982/1‑149 (MQ=255)
                                                                      cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg                                                                               >  8:185122/1‑149 (MQ=255)
                                                                      cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg                                                                               <  5:47573/149‑1 (MQ=255)
                                                                      cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg                                                                               >  7:39642/1‑149 (MQ=255)
                                                                       ggAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCggg                                                                              <  7:185122/149‑1 (MQ=255)
                                                                        gAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGt                                                                             <  8:58982/149‑1 (MQ=255)
                                                                               ggCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGACCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATc                                                                        >  1:237790/1‑148 (MQ=255)
                                                                               ggCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATc                                                                        >  1:7086/1‑147 (MQ=255)
                                                                                gCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg                                                                               <  5:121778/139‑1 (MQ=255)
                                                                                gCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg                                                                               >  6:121778/1‑139 (MQ=255)
                                                                                gCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAg                                                                     <  5:226592/149‑1 (MQ=255)
                                                                                                tCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcgagcagggcggcgtcaaactgctgaaggtgcggga                                                      <  3:84760‑M2/149‑98 (MQ=255)
                                                                                                tCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCtt                                                      <  4:175937/148‑1 (MQ=255)
                                                                                                   ttGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcgagcagggcggcgtcaaactgctgaaggtgcgggatga                                                   <  6:150442‑M2/149‑101 (MQ=255)
                                                                                                      gCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctg                                                                                                                          >  1:272586‑M2/1‑46 (MQ=255)
                                                                                                      gCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctg                                                                                                                          <  2:272586‑M2/75‑30 (MQ=255)
                                                                                                        cacaGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGACCAACCTTCAGCTCATc                                             >  7:46423/1‑149 (MQ=255)
                                                                                                         acaGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCa                                                    <  7:133081/141‑1 (MQ=255)
                                                                                                         acaGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCa                                                    >  8:133081/1‑141 (MQ=255)
                                                                                                               gccggccgCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTc                                      <  3:320996/149‑1 (MQ=255)
                                                                                                                  ggccgCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAgg                                   <  8:39642/149‑1 (MQ=255)
                                                                                                                  ggccgCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAgg                                   <  6:135871/149‑1 (MQ=255)
                                                                                                                         tCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTATATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGt                               <  6:239804/147‑1 (MQ=255)
                                                                                                                         tCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTATATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGt                               >  5:239804/1‑147 (MQ=255)
                                                                                                                         tCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGtt                              >  4:180100/1‑148 (MQ=255)
                                                                                                                           gACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGGCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGCGGCACTGGCCAACGTTGAGCTGGTCGGTCGTCCGGCTGTTgtt                           >  8:249674/1‑147 (MQ=255)
                                                                                                                           gACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGACCAACCTTCAGCTCATCGGTCTTCAGGCTGTTg                             <  8:46423/147‑1 (MQ=255)
                                                                                                                                          ggcAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGc            <  1:136088/149‑1 (MQ=255)
                                                                                                                                          ggcAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGc            >  2:119163/1‑149 (MQ=255)
                                                                                                                                          ggcAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGc            >  2:236568/1‑149 (MQ=255)
                                                                                                                                               tCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCcaca        >  1:256774/1‑149 (MQ=255)
                                                                                                                                               tCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCacac       >  6:170846/1‑149 (MQ=255)
                                                                                                                                                  ggTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAGCCTTCAGCTCATCGGTCTTCa                                     >  8:104180/1‑116 (MQ=255)
                                                                                                                                                   gTTGGCCAGCCGGAAGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGAc   <  1:119163/149‑1 (MQ=255)
                                                                                                                                                    ttGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGAcc  <  3:180100/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
CTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGCCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATCGGTCTTCAGGCTGTTGATGCTGCGCAGACTGGCCACACTGACC  >  NC_002947/5567292‑5567587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.