| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5567397 | 39 (0.740) | 4 (0.080) | 4/242 | NT | 9.1% | coding (89/1899 nt) | mutL | DNA mismatch repair protein MutL |
| ? | NC_002947 | = 5567439 | 43 (0.850) | coding (47/1899 nt) | mutL | DNA mismatch repair protein MutL | |||||
TCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATC > NC_002947/5567252‑5567544 | tCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCcaca < 6:153974/148‑1 (MQ=255) aGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACgccgg > 2:32610/1‑149 (MQ=255) gggCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACgccgg‑c > 3:85816/1‑149 (MQ=255) aGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTc < 8:259865/149‑1 (MQ=255) gaGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCTGCAGTTTGCCGGCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACaa < 7:231337/148‑1 (MQ=255) tcgtcgGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCACTCGACAACCTc < 6:317514/149‑1 (MQ=255) tGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATc < 6:48654/149‑1 (MQ=255) gCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCt > 2:147986/1‑149 (MQ=255) ccGGTGCCATCTTCCCGCAGCTTCTGCAGTTTGACGCCGCCCTGCTCGAGTTGGATATGGATGCGCCGGGCACGGGAGTCCTGGGTGTTTTCCAGCAGTTCCTTGGCCACAGACgccgg < 3:45421/119‑1 (MQ=255) cTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTt > 3:215118‑M2/1‑148 (MQ=255) ccATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggc < 3:330294‑M2/149‑5 (MQ=255) tcatcCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAaccagattgccgccggcgaggttgtcgagcggccggcgtctgtggccaa < 6:150442‑M1/149‑50 (MQ=255) tcatcCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAg > 2:260771/1‑149 (MQ=255) tcCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCAaccagattgccgccggcgaggttgtcgagcggccggcgtctgtggccaagga < 3:84760‑M1/149‑53 (MQ=255) ccGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCcgc < 1:32610/148‑1 (MQ=255) cGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCAGCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCgg < 4:85816/149‑1 (MQ=255) gcagTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGagcagc > 4:320996/1‑149 (MQ=255) cagTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCt > 5:135871/1‑149 (MQ=255) gTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGa < 1:260771/149‑1 (MQ=255) cgccgcCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTcgc < 1:158891/149‑1 (MQ=255) gccgccCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTcgc > 6:231310/1‑148 (MQ=255) gccgccCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTcgc < 5:231310/148‑1 (MQ=255) cccTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAAcc < 1:147986/149‑1 (MQ=255) cTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGc > 6:47573/1‑149 (MQ=255) cTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCAc > 5:102512/1‑149 (MQ=255) tCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggcca > 7:84417‑M2/1‑106 (MQ=255) tCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggcca < 8:84417‑M2/112‑7 (MQ=255) tCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGCTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACt > 3:41908/1‑149 (MQ=255) cTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACtcatc < 6:102512/149‑1 (MQ=255) ttCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGc < 5:133188/109‑1 (MQ=255) ttCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGc > 6:133188/1‑109 (MQ=255) ttCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACtcatca > 3:175937/1‑149 (MQ=255) gATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCAtt < 4:330294/148‑1 (MQ=255) atCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTgcgc > 6:226592/1‑149 (MQ=255) cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg < 5:47573/149‑1 (MQ=255) cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg > 8:185122/1‑149 (MQ=255) cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg > 7:58982/1‑149 (MQ=255) cGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg > 7:39642/1‑149 (MQ=255) ggAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCggg < 7:185122/149‑1 (MQ=255) gAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGt < 8:58982/149‑1 (MQ=255) cAGGCTGTTTTCCAGCAGTTCCTTGGCCAaccagattgccgccggcgaggttgtcgagcggccggcgtctgtggc > 1:272586‑M1/1‑29 (MQ=255) cAGGCTGTTTTCCAGCAGTTCCTTGGCCAaccagattgccgccggcgaggttgtcgagcggccggcgtctgtggc < 2:272586‑M1/75‑47 (MQ=255) ggCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGGACCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATc > 1:237790/1‑148 (MQ=255) ggCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATc > 1:7086/1‑147 (MQ=255) gCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg < 5:121778/139‑1 (MQ=255) gCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCgg > 6:121778/1‑139 (MQ=255) gCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAg < 5:226592/149‑1 (MQ=255) tCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcgagcagggcggcgtcaaactgctgaaggtgcggga < 3:84760‑M2/149‑98 (MQ=255) tCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCtt < 4:175937/148‑1 (MQ=255) ttGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcgagcagggcggcgtcaaactgctgaaggtgcgggatga < 6:150442‑M2/149‑101 (MQ=255) tGGCCAaccagattgccgccggcgaggttgtcgagcggccggcgtctgtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcga > 7:84417‑M1/1‑6 (MQ=255) tGGCCAaccagattgccgccggcgaggttgtcgagcggccggcgtctgtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcga < 8:84417‑M1/112‑107 (MQ=255) gCCAaccagattgccgccggcgaggttgtcgagcggccggcgtctgtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcgagcagggcggcgtcaaactgctgaaggtgcgggatgatgg < 3:330294‑M1/149‑146 (MQ=255) gCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctg < 2:272586‑M2/75‑30 (MQ=255) gCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTtggccaaggaactgctggaaaacagcctg > 1:272586‑M2/1‑46 (MQ=255) cacaGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGACCAACCTTCAGCTCATc > 7:46423/1‑149 (MQ=255) acaGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCa < 7:133081/141‑1 (MQ=255) acaGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCa > 8:133081/1‑141 (MQ=255) aaccagattgccgccggcgaggttgtcgagcggccggcgtctgtggccaaggaactgctggaaaacagcctggactccggtgcccggcgcatcgatatcgaagtcgagcagggcggcgtcaaactgctgaaggtgcgggatgatggcag > 3:215118‑M1/1‑1 (MQ=255) | TCGAGCCAGGGCCAGCGGCAGGTCGTCGGCAGAAATGCCGCTGCCATCATCCCGCACCTTCAGCAGTTTGACGCCGCCCTGCTCGACTTCGATATCGATGCGCCGGGCACCGGAGTCCAGGCTGTTTTCCAGCAGTTCCTTGGCCACAGACGCCGG‑CCGCTCGACAACCTCGCCGGCGGCAATCTGGTTGGCCAGCCGCGGGCTGAGCAGCTGAATTCGCGAACCGCCACTCATCATTGCGCGGCCAAGGTTGTGGCGGGTACATCGAGGCGCTGGCCAACCTTCAGCTCATC > NC_002947/5567252‑5567544 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |