New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5673612	52 (0.980)	4 (0.080)	4/246	NT	7.6%	coding (855/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase
	?	NC_002947	= 5673663	47 (0.920)					coding (906/1881 nt)	rhlE‑II	ATP‑dependent RNA helicase

ACAAGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGCCTGGGAACAGGTGTTGGTGTTCACCCGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5673461‑5673612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGTGGATCGCGGCGGCGGTCAGGCCTTGCTTTTCCAGGTACTCGGCCAGGCGGTTGGCGCCATGCTTGGTTCGGGTGAACA  <  NC_002947/5673663‑5673518                                                                                                                                                                                                                                                                                                            ACAAGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGCCTGGGAACAGGTGTTGGTGTTCACCCGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGC                                                                                                                                                       >  3:109887/1‑149    AGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGCCTGGGAACAGGTGTTGGTGTTCACCCGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAG                                                                                                                                                    <  5:155988/149‑1                                                                                                        GGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCT                                                                                           <  7:188304/106‑1                                                                                                        GGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCT                                                                                           >  8:188304/1‑106                                                                                                            AAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGT                                                                                >  7:316129/1‑113                                                                                                            AAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGT                                                                                <  8:316129/113‑1                                                                                                                                                     CCAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGTGGATCGCGGCGGCGGTCAGGCCTTGCTTTTCCAGGTACTCGGCCAGGCGGTTGGCGCCATGCTTGGTTCGG         <  5:123026/143‑1                                                                                                                                                     CCAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGTGGATCGCGGCGGCGGTCAGGCCTTGCTTTTCCAGGTACTCGGCCAGGCGGTTGGCGCCATGCTTGGTTCGG         >  6:123026/1‑143                                                                                                                                                     CCAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGTGGATCGCGGCGGCGGTCAGGCCTTGCTTTTCCAGGTACTCGGCCAGGCGGTTGGCGCCATGCTT                >  3:115293/1‑136                                                                                                                                                     CCAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGTGGATCGCGGCGGCGGTCAGGCCTTGCTTTTCCAGGTACTCGGCCAGGCGGTTGGCGCCATGCTT                <  4:115293/136‑1                                                                                                                                                      CAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGGGTTCTGGCTCTTGTTGCCGTGGATCGCGGCGGCGGTCAGGCCTTGCTTTTCCAGGTACTTGGCCAGGCGGTTGGCGCCATGCTTGGTTCGGGTGAACA  >  1:137555/1‑149                                                                                                                                                      CAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGTGGATCGCGGCGGCGGTCAGGCCTTGCTTTTCCAGGTACTCGGCCAGGCGGTTGGCGCCATGCTTGGTTCGGGTGAACA  >  4:43858/1‑149                                                                                                                                                      CAGTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGTGGATCGCGGCGGCGGTCAGGCCTTGCTTTTCCAGGTACTCGGCCAGGCGGTTGGCGCCATGCTTGGTTCGGGTGAACA  >  7:293601/1‑149                                                                                                                                                                                                                                                                                                            ACAAGCGTGCCTTGCTGGCGCACCTGATCACCCTGGGCGCCTGGGAACAGGTGTTGGTGTTCACCCGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5673461‑5673612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagTACGCGCACGCTGTTGGCCTTGAAGTCGGCCAGCGCCTTGGTGCGGGCGTTCTGGCTCTTGTTGCCGTGGATCGCGGCGGCGGTCAGGCCTTGCTTTTCCAGGTACTCGGCCAGGCGGTTGGCGCCATGCTTGGTTCGGGTGAACA  <  NC_002947/5673663‑5673518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.