New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5673612 | 52 (0.980) | 4 (0.080) | 4/246 | NT | 7.6% | coding (855/1881 nt) | rhlE‑II | ATP‑dependent RNA helicase |
? | NC_002947 | = 5673663 | 47 (0.920) | coding (906/1881 nt) | rhlE‑II | ATP‑dependent RNA helicase |
TGTTCACCCGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGCCGTACCGGCCGTGCCGGTCGTTCGGGCGAAGCTATTTCC > NC_002947/5673518‑5673810 | tgtTCACCCGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActg > 4:43858‑M2/1‑146 (MQ=255) tgtTCACCCGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActg > 7:293601‑M2/1‑146 (MQ=255) tgtTCACCCGAACCAAGCATGGCGCCAACCGCCTGGCCAAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACCCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActg > 1:137555‑M2/1‑146 (MQ=255) cccGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGcc > 7:242645/1‑149 (MQ=255) ccGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActgg < 5:123026‑M2/143‑5 (MQ=255) ccGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActgg > 6:123026‑M2/1‑139 (MQ=255) ccGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCa > 1:225559/1‑149 (MQ=255) ccGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCa > 5:339348/1‑149 (MQ=255) ccGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCa > 5:225414/1‑149 (MQ=255) cGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCAc < 2:266751/149‑1 (MQ=255) aaGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActgg > 3:115293‑M2/1‑132 (MQ=255) aaGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActgg < 4:115293‑M2/136‑5 (MQ=255) aaGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACAt > 7:241178/1‑149 (MQ=255) cGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCt < 2:88983/149‑1 (MQ=255) gCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTg < 2:237320/149‑1 (MQ=255) ccTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTg > 8:117223/1‑148 (MQ=255) ccGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTAAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATc < 6:225414/149‑1 (MQ=255) aGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGAc < 8:242645/149‑1 (MQ=255) aGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGAc < 1:183402/149‑1 (MQ=255) aGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGAc < 2:225559/149‑1 (MQ=255) tACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGAc > 1:326940/1‑147 (MQ=255) cTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGtt > 5:60035/1‑149 (MQ=255) cTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGtt > 3:65296/1‑149 (MQ=255) gAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGc < 4:65296/148‑1 (MQ=255) aGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCAt < 2:326940/149‑1 (MQ=255) gCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCAtg < 8:241178/149‑1 (MQ=255) aaGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCAtgtt > 3:123999/1‑149 (MQ=255) cgcgATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGc > 3:34676/1‑149 (MQ=255) cgcgATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGc < 2:100361/149‑1 (MQ=255) aCGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActggctcttgttgccgtggatcgcggcggcggtcaggccttgctt < 8:316129‑M2/113‑46 (MQ=255) aCGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActggctcttgttgccgtggatcgcggcggcggtcaggccttgctt > 7:316129‑M2/1‑68 (MQ=255) ggCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGa < 4:34676/149‑1 (MQ=255) caaGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAgg > 3:333525/1‑146 (MQ=255) gagCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGcc < 2:253311/67‑1 (MQ=255) gagCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGcc > 1:253311/1‑67 (MQ=255) gagCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGa > 4:106591/1‑126 (MQ=255) gagCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGa < 3:106591/126‑1 (MQ=255) agCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActggctcttgttgccgtggatcgcggcggcggtcaggccttgcttttcc < 7:188304‑M2/106‑50 (MQ=255) agCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTActggctcttgttgccgtggatcgcggcggcggtcaggccttgcttttcc > 8:188304‑M2/1‑57 (MQ=255) ccAGAACGCCCGCACCAAGGCGCTGGCCGACTTCGAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGa > 4:206777/1‑138 (MQ=255) ccAGAACGCCCGCACCAAGGCGCTGGCCGACTTCGAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGa < 3:206777/138‑1 (MQ=255) aGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTc < 2:84378/149‑1 (MQ=255) aCGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCAc < 4:333525/149‑1 (MQ=255) gCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCg > 1:295654/1‑149 (MQ=255) ccGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGa < 2:25914/129‑1 (MQ=255) ccGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGa > 1:25914/1‑129 (MQ=255) ccGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCg > 4:256514/1‑147 (MQ=255) ccGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGAGCCTACTCGTCGCCACCGACATCGCTCACCGCGGCCTGGACATCGACCAGATGCCCCATGTTGTCAACTTCGACCAGCCGAATGTCCAGGAAGACTACGTCCACCGc > 6:181429/1‑148 (MQ=255) ccAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGc < 4:123999/149‑1 (MQ=255) ccAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGc < 3:256514/149‑1 (MQ=255) ccAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGc < 2:295654/149‑1 (MQ=255) cAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGc > 4:322403/1‑113 (MQ=255) cAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGc < 3:322403/113‑1 (MQ=255) gACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGCCGTACCGGCCGTGc > 7:33923/1‑149 (MQ=255) aCTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGCCGTACCGGCCGTGcc < 5:258409/149‑1 (MQ=255) ttCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGCCGTACCGGCCGTGCCgg > 8:238956/1‑149 (MQ=255) cAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCgg > 7:250083/1‑129 (MQ=255) cAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCgg < 8:250083/129‑1 (MQ=255) cAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGCCGTACCGGCCGTGCCGGt < 8:33923/148‑1 (MQ=255) cAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGCCGTACCGGCCGTGCCGGTCGTTCgg < 6:60035/149‑1 (MQ=255) aCAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGCCGTACCGGCCGTGCCGGTCGTTCGGGc > 6:295301/1‑149 (MQ=255) tACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGCCGTACCGGCCGTGCCGGTCGTTCGGGCGAAGCTATTTcc > 3:329025/1‑149 (MQ=255) | TGTTCACCCGAACCAAGCATGGCGCCAACCGCCTGGCCGAGTACCTGGAAAAGCAAGGCCTGACCGCCGCCGCGATCCACGGCAACAAGAGCCAGAACGCCCGCACCAAGGCGCTGGCCGACTTCAAGGCCAACAGCGTGCGCGTACTGGTCGCCACCGACATCGCTGCCCGCGGCCTGGACATCGACCAGTTGCCCCATGTTGTCAACTTCGAGCTGCCGAATGTCGAGGAAGACTACGTCCACCGCATCGGCCGTACCGGCCGTGCCGGTCGTTCGGGCGAAGCTATTTCC > NC_002947/5673518‑5673810 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |