New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5684994	73 (1.380)	4 (0.080)	4/236	NT	5.8%	coding (1899/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	= 5685031	63 (1.280)					coding (1862/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver

CCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5684840‑5684994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcagtgCCGCCATGGCCGGTGTGATGCCGGTGGCCGAACTGGCCACTGCCTTCGACCGCCTGGCCCGTGAGTACAAGGGCCATCAACTGCCACTGCAAATGGCCGAAATGGAATGGCTGGAGGCTGCGCGGTCGTTGTTCCATCTG  <  NC_002947/5685031‑5684892                                                                                                                                                                                                                                                                                                         CCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTCGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGGCGAAG                                                                                                                                                    >  4:281808/1‑149  CGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGG                                                                                                                                                   <  1:276295/149‑1   GCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGG                                                                                                                                                   >  6:355306/1‑148                               TGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGA                                                                                                                                                      <  7:92581/117‑1                               TGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGA                                                                                                                                                      >  8:92581/1‑117                                   ATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGCCGCCATGGCCGGTGTGATGCCGGTGGC                                                                                                                  >  6:163172/1‑149                                                        ATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGCCGCCATGGCCGGTGTGATGCCGGTGGCCGAACTGGCCACTGCCTTCGA                                                                                             <  5:163172/149‑1                                                                  GACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGCCGCCATGGCCGGTGTGATGCCGGTGGCCGAACTGGCCACTGCCTTCGACC                                                                                           >  7:294344/1‑141                                                                  GACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGCCGCCATGGCCGGTGTGATGCCGGTGGCCGAACTGGCCACTGCCTTCGACC                                                                                           <  8:294344/141‑1                                                                                                                                                   AAGGCAGTGCCGCCATGGCCGGTGTGATGCCGGTGGCCGAACTGGCCACTGCCTTCGACCGCCTGGCCCGTGAGTACAAGGGCCATCAACTGCCACTGCAAATGGCCGAAATGGAATGGCTGGAGGCTGCGCGGTCGTTGTTCCATCTG  <  6:217187/149‑1                                                                                                                                                   AAGGCAGTGCCGCCATGGCCGGTGTGATGCCGGTGGCCGAACTGGCCACTGCCTTCGACCGCCTGGCCCGTGAGTACAAGGGCCATCAACTGCCACTGCAAATGGCCGAAATGGAATGGCTGGAGGCTGCGCGG                 <  5:136340/134‑1                                                                                                                                                   AAGGCAGTGCCGCCATGGCCGGTGTGATGCCGGTGGCCGAACTGGCCACTGCCTTCGACCGCCTGGCCCGTGAGTACAAGGGCCATCAACTGCCACTGCAAATGGCCGAAATGGAATGGCTGGAGGCTGCGCGG                 >  6:136340/1‑134                                                                                                                                                                                                                                                                                                         CCGCGGCACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5684840‑5684994 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcagtgCCGCCATGGCCGGTGTGATGCCGGTGGCCGAACTGGCCACTGCCTTCGACCGCCTGGCCCGTGAGTACAAGGGCCATCAACTGCCACTGCAAATGGCCGAAATGGAATGGCTGGAGGCTGCGCGGTCGTTGTTCCATCTG  <  NC_002947/5685031‑5684892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.