New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5684994	73 (1.380)	4 (0.080)	4/236	NT	5.8%	coding (1899/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver
	?	NC_002947	= 5685031	63 (1.280)					coding (1862/4941 nt)	PP_4988	signal transduction histidine kinase CheA/CheY‑like receiver

ACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGC  >  NC_002947/5684847‑5685140                                                                                                                                                     |                                                                                                                                                   aCCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTgg                                                                                                                                                   >  8:101321/1‑149 (MQ=255)         tGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCg                                                                                                                                           <  7:143908/149‑1 (MQ=255)                cAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCg                                                                                                                                    <  2:201288/149‑1 (MQ=255)                           tATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCg                                                                                                                         >  8:234804/1‑149 (MQ=255)                            aTCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGccgccatggccggtgtgatgccggtggc                                                                                                                        >  6:163172‑M1/1‑121 (MQ=255)                             tCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGc                                                                                                                       >  7:296425/1‑149 (MQ=255)                                acgcccgcCAAGCCCAGCTGGCACAACGTCCGCGCAGGCTCCACCCATTCCATTTCGGCCATTTGCCCG‑GGCAGGTGATGGCCCGTGTACGCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCAt                                                                                                                    <  3:281808/144‑1 (MQ=255)                                 gTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATg                                                                                                                   >  7:133117/1‑149 (MQ=255)                                   tGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGACATTTGGAGT‑GGCAGTTGATGGCCCTTGTACTCACGTGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATgg                                                                                                                  <  4:223260/148‑1 (MQ=255)                                        cAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATggcgg                                                                                                               >  6:335732/1‑146 (MQ=255)                                        cAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGACATggcgg                                                                                                               <  5:335732/146‑1 (MQ=255)                                              cAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGcactgcctt                                                                                                      <  6:217187‑M2/149‑10 (MQ=255)                                               aGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCttt                                                                                                     <  1:127380/149‑1 (MQ=255)                                               aGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCttt                                                                                                     >  5:205149/1‑149 (MQ=255)                                               aGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCttt                                                                                                     <  6:205149/149‑1 (MQ=255)                                                 aTGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGccgccatggccggtgtgatgccggtggccgaactggccactgccttcga                                                                                                   <  5:163172‑M1/149‑50 (MQ=255)                                                 aTGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGa                                                                                                   <  7:101321/149‑1 (MQ=255)                                                 aTGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGa                                                                                                   <  7:234804/149‑1 (MQ=255)                                                   ggAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAgt                                                                                                 >  8:159534/1‑149 (MQ=255)                                                    gAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGTGGGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAgt                                                                                                 >  1:87710/1‑149 (MQ=255)                                                    gAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAgt                                                                                                 <  5:355306/148‑1 (MQ=255)                                                     aacaacGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAgtgt                                                                                               <  8:133117/149‑1 (MQ=255)                                                       caacGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAgtgtgt                                                                                             >  3:150750/1‑149 (MQ=255)                                                          cGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCttt                                                                                                     <  6:176921/138‑1 (MQ=255)                                                          cGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCttt                                                                                                     >  5:176921/1‑138 (MQ=255)                                                           gACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGccgccatggccggtgtgatgccggtggccgaactggccactgccttcgacc                                                                                                 >  7:294344‑M1/1‑90 (MQ=255)                                                           gACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGccgccatggccggtgtgatgccggtggccgaactggccactgccttcgacc                                                                                                 <  8:294344‑M1/141‑52 (MQ=255)                                                           gACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGc                                                                                           >  2:180940/1‑147 (MQ=255)                                                             ccGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGcactgcctt                                                                                                      >  6:136340‑M2/1‑125 (MQ=255)                                                             ccGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGcactgcctt                                                                                                      <  5:136340‑M2/134‑10 (MQ=255)                                                              cgcgCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGc                                                                                      <  8:296425/149‑1 (MQ=255)                                                                cgcAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCAc                                                                                    >  3:34656/1‑149 (MQ=255)                                                                 gcAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACg                                                                                   >  4:241349/1‑149 (MQ=255)                                                                    gCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTg                                                                                <  2:87710/149‑1 (MQ=255)                                                                     ccTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGc                                                                               <  1:180940/149‑1 (MQ=255)                                                                      cTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAgg                                                                                       >  4:218046/1‑140 (MQ=255)                                                                      cTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAgg                                                                                       <  3:218046/140‑1 (MQ=255)                                                                       tCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCaa                                                                             <  3:241349/149‑1 (MQ=255)                                                                         cAGCCATTCCATTTCGGCCATTTGCAGT‑GGGAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGt                                                                           >  1:28445/1‑149 (MQ=255)                                                                           gCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCttt                                                                                                     <  8:138187/121‑1 (MQ=255)                                                                           gCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCa                                                                         >  5:189768/1‑149 (MQ=255)                                                                             cattccattTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATc                                                                       >  5:240612/1‑149 (MQ=255)                                                                                   attTCGGCCATTTGTAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGAc                                                                 >  4:63996/1‑149 (MQ=255)                                                                                   attTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCAt                                                                                                                                >  1:151373/1‑86 (MQ=255)                                                                                   attTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCAt                                                                                                                                <  2:151373/86‑1 (MQ=255)                                                                                       cGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGc                                                             >  3:209816/1‑149 (MQ=255)                                                                                        ggCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGAAGTGGCCAGTTCGGCCACCGGCATCACCCCGGCCATGGCGGCACTGCCGTTGAGTGTGTGCAAGGCACGCTCCAAGTCATCACTGACCCGc                                                             >  8:136991/1‑148 (MQ=255)                                                                                         gCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCgt                                                           >  2:48600/1‑149 (MQ=255)                                                                                            aTTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTc                                                        <  4:34656/149‑1 (MQ=255)                                                                                            aTTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTc                                                        <  6:240612/149‑1 (MQ=255)                                                                                                 cAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCg                                                                      <  7:269135/130‑1 (MQ=255)                                                                                                 cAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCg                                                                      >  8:269135/1‑130 (MQ=255)                                                                                                      ggCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGc                                                                                      >  6:299498/1‑110 (MQ=255)                                                                                                      ggCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGc                                                                                      >  2:126942/1‑110 (MQ=255)                                                                                                      ggCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGc                                                                                      <  1:126942/110‑1 (MQ=255)                                                                                                      ggCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGc                                                                                      <  5:299498/110‑1 (MQ=255)                                                                                                             gATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCaa                                                                             <  1:285197/112‑1 (MQ=255)                                                                                                             gATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCaa                                                                             >  2:285197/1‑112 (MQ=255)                                                                                                             gATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCt                                         <  4:150750/148‑1 (MQ=255)                                                                                                                 gCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGc                                     <  4:209816/148‑1 (MQ=255)                                                                                                                   ccTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTg                                      >  5:206434/1‑145 (MQ=255)                                                                                                                   ccTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCa                                    >  3:171838/1‑147 (MQ=255)                                                                                                                   ccTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCa                                    <  4:171838/147‑1 (MQ=255)                                                                                                                       gTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGccgccg                                              >  6:215126/1‑133 (MQ=255)                                                                                                                       gTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGccgccg                                              <  5:215126/133‑1 (MQ=255)                                                                                                                       gTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATa                                <  5:217187/147‑1 (MQ=255)                                                                                                                          cTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTg                                                     >  8:214620/1‑123 (MQ=255)                                                                                                                           tCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCaa                                                                             >  8:264976/1‑98 (MQ=255)                                                                                                                           tCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCaa                                                                             <  7:264976/98‑1 (MQ=255)                                                                                                                             aCGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTc                          <  1:48600/147‑1 (MQ=255)                                                                                                                             aCGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGCCGTGGCCGCCGGTGCTTTGCAGATAAACCTCaa                        <  6:189768/149‑1 (MQ=255)                                                                                                                             aCGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGACATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGc                                     >  6:217347/1‑136 (MQ=255)                                                                                                                             aCGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGACATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGc                                     <  5:217347/136‑1 (MQ=255)                                                                                                                                        ggTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGcactgccttcgaccgcctggcccgtgagtacaagggccatcaactgccactgcaaatggccgaaatggaatggctggaggctgcgcggtc                     >  7:294344‑M2/1‑51 (MQ=255)                                                                                                                                        ggTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGcactgccttcgaccgcctggcccgtgagtacaagggccatcaactgccactgcaaatggccgaaatggaatggctggaggctgcgcggtc                     <  8:294344‑M2/141‑91 (MQ=255)                                                                                                                                        ggTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCa                                    <  4:329660/126‑1 (MQ=255)                                                                                                                                        ggTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCa                                    >  3:329660/1‑126 (MQ=255)                                                                                                                                         gTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGACCAGAt            >  4:163837/1‑149 (MQ=255)                                                                                                                                          tCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGcactgccttcgaccgcctggcccgtgagtacaagggccatcaactgccactgcaaatggccgaaatggaatggctggaggctgcgcggtcgttgttccat           <  5:163172‑M2/149‑101 (MQ=255)                                                                                                                                          tCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGcc                >  4:213703/1‑144 (MQ=255)                                                                                                                                          tCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGcc                <  3:213703/144‑1 (MQ=255)                                                                                                                                             aaGGCAGTGccgccatggccggtgtgatgccggtggccgaactggccactgccttcgaccgcctggcccgtgagtacaagggccatcaactgccactgcaaatggccgaaatggaatggctggaggctgcgcggtcgttgttccatctg        <  6:217187‑M1/149‑141 (MQ=255)                                                                                                                                             aaGGCAGTGccgccatggccggtgtgatgccggtggccgaactggccactgccttcgaccgcctggcccgtgagtacaagggccatcaactgccactgcaaatggccgaaatggaatggctggaggctgcgcgg                       <  5:136340‑M1/134‑126 (MQ=255)                                                                                                                                             aaGGCAGTGccgccatggccggtgtgatgccggtggccgaactggccactgccttcgaccgcctggcccgtgagtacaagggccatcaactgccactgcaaatggccgaaatggaatggctggaggctgcgcgg                       >  6:136340‑M1/1‑9 (MQ=255)                                                                                                                                             aaGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGcc        >  1:141348/1‑149 (MQ=255)                                                                                                                                              aGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCaa                        >  8:142511/1‑132 (MQ=255)                                                                                                                                              aGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCaa                        <  7:142511/132‑1 (MQ=255)                                                                                                                                                 cAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTgc    <  3:63996/149‑1 (MQ=255)                                                                                                                                                 cAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTgc    <  6:206434/149‑1 (MQ=255)                                                                                                                                                   gTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGACCAGATGGCCCTgcgc  <  3:163837/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ACCGGGGATGGCGGCCAGGGGCGTGCTATCGAGTTGCGCCAAGCCCAGATGGAACAACGACCGCGCAGCCTCCAGCCATTCCATTTCGGCCATTTGCAGT‑GGCAGTTGATGGCCCTTGTACTCACGGGCCAGGCGGTCGAAGGCAGTGGCCAGTTCGGCCACCGGCATCACACCGGCCATGGCGGCACTGCCTTTGAGTGTGTGCAAGGCACGCTGCAAGTCATCGCTGACCGGCGTGTCGTGGCCGCCGGTGCTTTGCAGATAAACCTCAAGGCTGGCCAGATGGCCCTGCGC  >  NC_002947/5684847‑5685140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.