| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5792613 = | 50 (0.950) | 4 (0.080) | 3/236 | NT | 7.5% | coding (718/1419 nt) | gltD | glutamate synthase subunit beta |
| ? | NC_002947 | 5792679 = | 52 (1.060) | coding (652/1419 nt) | gltD | glutamate synthase subunit beta | |||||
CCTTCGGTATCCCCGAGTTCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5792765‑5792613‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgttcaGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCG > NC_002947/5792679‑5792823 CCTTCGGTATCCCCGAGTTCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTG > 7:304532/1‑149 TCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCG > 3:161232/1‑128 TCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCG < 4:161232/128‑1 TGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACC > 5:326450/1‑148 TGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACC > 8:7517/1‑148 GATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGAT < 6:326450/149‑1 ACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGG < 7:7517/149‑1 GTGTTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGC < 3:166422/149‑1 TTCAGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCG > 1:241270/1‑149 CCTTCGGTATCCCCGAGTTCAAGCTGGAAAAGACCGTGCTCAGCAACCGCCGTGAAGTGTTCACCGGCATGGGCATCGAGTTCCGCCTGAACACCGAGGTGGGCAAGGATGTGACCATGGAACAGCTGCTCGCCGAGTACGACGCGGTGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5792765‑5792613‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtgttcaGGCGGAACTCGATGCCCATGCCGGTGAACACTTCACGGCGGTTGCTGAGCACGGTCTTTTCCAGCTTGAACTCGGGGATACCGAAGGTCAGCAGGCCACCGATCTCAGGGTTTTTGTCGAACACCACCGGGGTTACCCCGGCGCG > NC_002947/5792679‑5792823 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |