New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6056126	39 (0.740)	3 (0.060)	3/244	NT	7.3%	coding (253/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	= 6056175	39 (0.770)					coding (302/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator

TCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6055974‑6056126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgACGGTGTAGATGGCGCCGACCTTGAGCGGAGCGGTCAGCTGATTCTTGCCGGCCTGGGCCAGCTC  <  NC_002947/6056175‑6056111                                                                                                                                                                                                                            TCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAG                                                                       <  4:64209/149‑1    GTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCC                                                                    <  5:91514/149‑1    GTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCC                                                                    <  7:61992/149‑1     TGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCG                                                                   >  3:151496/1‑149                                                              AGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGGCCTAGCGCAGAATGTACTGGAGCAGGCCCAGGTCTTTCGCGAGCTGGCCCAGGCCGACGGTGTAGATGGCGCCGACCTTGAGCGGAGCGGTCAGCTGATTCTTGCCGGCCTGG          <  3:13300/149‑1                                                                                                   CAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGACGGTGTAGATGGCGCCGACCTTGAGCGGAGCGGTCAGCTGATTCTTGCCGGCCTGGGCCAGCTC  <  7:276520/120‑1                                                                                                   CAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGACGGTGTAGATGGCGCCGACCTTGAGCGGAGCGGTCAGCTGATTCTTGCCGGCCTGGGCCAGCTC  >  8:276520/1‑120                                                                                                                                                                                                                            TCGGTGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6055974‑6056126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgACGGTGTAGATGGCGCCGACCTTGAGCGGAGCGGTCAGCTGATTCTTGCCGGCCTGGGCCAGCTC  <  NC_002947/6056175‑6056111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.