New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6056126	39 (0.740)	3 (0.060)	3/244	NT	7.3%	coding (253/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	= 6056175	39 (0.770)					coding (302/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator

AAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCGGTGATCATCGCCCTGCCGTT  >  NC_002947/6056027‑6056322                                                                                                                                                     |                                                                                                                                                    aaaaGCGAAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGt                                                                                                                                                     >  5:253553/1‑149 (MQ=255)          gTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTa                                                                                                                                            <  6:166988/149‑1 (MQ=255)           tACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTAc                                                                                                                                           <  4:289419/149‑1 (MQ=255)             cGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCTCTCAGCTCAAGGTCGGCGACATCTACACCGTCGGCCCCTACCt                                                                                                                                         <  8:243979/149‑1 (MQ=255)                cTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGtt                                                                                                                                      >  6:235295/1‑149 (MQ=255)                         gTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCt                                                                                                                             <  6:253553/149‑1 (MQ=255)                              cGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATcc                                                                                                                        >  8:84000/1‑149 (MQ=255)                               gAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATc                                                                                                                         >  8:108783/1‑147 (MQ=255)                               gAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATc                                                                                                                         <  7:108783/147‑1 (MQ=255)                                  aaCATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCg                                                                                                                      >  7:154537/1‑147 (MQ=255)                                             ccAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCt                                                                                                                             >  7:293648/1‑129 (MQ=255)                                             ccAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCt                                                                                                                             <  8:293648/129‑1 (MQ=255)                                               aaGCGCAGAAAGGACTGGTGCCTGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGTATCAGGTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCTCCTGATCCCGCAGCTGCACCGCGTg                                                                                                       <  8:178575/149‑1 (MQ=255)                                                                      gCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCCAGGTCGGCGCCATCTACACCGTCGGCCCATCCCTGTTCCCGACCCTGAAACCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACAt                                                                                >  6:265423/1‑149 (MQ=255)                                                                        ccAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACAt                                                                                <  2:312108/147‑1 (MQ=255)                                                                        ccAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACAt                                                                                >  1:312108/1‑147 (MQ=255)                                                                        ccAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCAGCTGTACATc                                                                               >  4:20454/1‑148 (MQ=255)                                                                          aGGGCATTCGCGAGCTGGCCCCGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCg                                                                              >  7:322570/1‑147 (MQ=255)                                                                            ggCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCCCCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCgaag                                                                           >  3:189856/1‑148 (MQ=255)                                                                                   gcgAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACtt                                                                    >  8:153342/1‑148 (MQ=255)                                                                                   gcgAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTc                                                                   <  8:154537/149‑1 (MQ=255)                                                                                   gcgAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTACACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACtt                                                                    >  2:237526/1‑148 (MQ=255)                                                                                   gcgAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTACACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTc                                                                   <  1:237526/149‑1 (MQ=255)                                                                                     gAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTcggcctgggccagctcgcgaatgccctgggcctgctccagtactttctgcgcttg                                                                                              >  8:276520‑M2/1‑65 (MQ=255)                                                                                     gAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTcggcctgggccagctcgcgaatgccctgggcctgctccagtactttctgcgcttg                                                                                              <  7:276520‑M2/120‑56 (MQ=255)                                                                                             ccAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTcggcctgggccagctcgcgaaagacctgggcctgctccagtacattctgcgctaggccgacgatgttttcgccgaccggggtcaggcgtact                                                         <  3:13300‑M2/149‑93 (MQ=255)                                                                                                ggCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGc                                                      <  5:235295/149‑1 (MQ=255)                                                                                                   cGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGt                                                    >  2:315571/1‑148 (MQ=255)                                                                                                              aGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTgcg                                         >  2:285577/1‑148 (MQ=255)                                                                                                                cTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCaa                                      >  7:7431/1‑149 (MQ=255)                                                                                                                   aCCGCTCCGCTCAAGGTCGGCGCCATCTACACCCTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACg                                    <  8:7431/148‑1 (MQ=255)                                                                                                                           gctcAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCgaa                                                                            <  4:6095/100‑1 (MQ=255)                                                                                                                           gctcAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCgaa                                                                            >  3:6095/1‑100 (MQ=255)                                                                                                                           gctcAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGc                                             <  1:143357/131‑1 (MQ=255)                                                                                                                           gctcAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGc                                             >  2:143357/1‑131 (MQ=255)                                                                                                                             tcAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGc                                                      >  4:84523/1‑120 (MQ=255)                                                                                                                             tcAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGc                                                      <  3:84523/120‑1 (MQ=255)                                                                                                                               aaGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATAGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTg                            <  7:127237/144‑1 (MQ=255)                                                                                                                               aaGGTCGGCGCCATCTACAAAGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATAGAAGAAAACTTCACCCAAGTAATGCTTGAAAATCTGCGCAAAGGCGAAATGGagat                       >  8:127237/1‑146 (MQ=255)                                                                                                                                 ggTCGGCGCCATCTACACCTTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCgg                     <  5:265423/149‑1 (MQ=255)                                                                                                                                 cgTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCCCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCgg                     <  1:315571/148‑1 (MQ=255)                                                                                                                                      gcgcCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCGGTGat                 >  4:138912/1‑148 (MQ=255)                                                                                                                                         ccATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCGGTGatcatc             <  7:153342/149‑1 (MQ=255)                                                                                                                                             cTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCgg                     <  7:203082/137‑1 (MQ=255)                                                                                                                                             cTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCgg                     >  8:203082/1‑137 (MQ=255)                                                                                                                                                   cGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCGGTGATCATCGCCCTGCCGt   <  4:189856/149‑1 (MQ=255)                                                                                                                                                    gTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCCGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCGGTGATCATCGCCCTGCCGtt  <  7:84000/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGTGAAAAGCTGCGCAACGGCGAACTGGACGCGGTGATCATCGCCCTGCCGTT  >  NC_002947/6056027‑6056322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.