New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6056126	39 (0.740)	3 (0.060)	3/244	NT	7.3%	coding (253/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator
	?	NC_002947	= 6056175	39 (0.770)					coding (302/927 nt)	oxyR	oxidative and nitrosative stress transcriptional dual regulator

TGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGT  >  NC_002947/6055978‑6056272                                                                                                                                                     |                                                                                                                                                   tgtgAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCG                                                                                                                                                    >  3:151496‑M1/1‑149 (MQ=255)   tgAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGc                                                                                                                                                  <  6:252524/149‑1 (MQ=255)   tgAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGc                                                                                                                                                  <  2:219582/149‑1 (MQ=255)     aagaagCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCACCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGc                                                                                                                                                  >  6:191447/1‑147 (MQ=255)            tCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAg                                                                                                                                         >  5:166988/1‑149 (MQ=255)            tCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTAGCGAGCTGGCCCAGGCCGGCAAGAATCAg                                                                                                                                         >  7:243979/1‑149 (MQ=255)              gAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAg                                                                                                                                         <  5:187512/147‑1 (MQ=255)               aGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTg                                                                                                                                      <  4:151496/149‑1 (MQ=255)                ggACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCACCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGa                                                                                                                                     <  5:191447/149‑1 (MQ=255)                   cGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTCACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACAGGAGCAGGCCCAGGGCAAACGCGACCTGGCCCAGGCCGGCAAGAATCAGCTGAccg                                                                                                                                  >  7:178575/1‑149 (MQ=255)                      gCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGAccgctc                                                                                                                               <  8:276559/149‑1 (MQ=255)                                  gATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCa                                                                                                                                          >  7:299213/1‑126 (MQ=255)                                  gATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCa                                                                                                                                          <  8:299213/126‑1 (MQ=255)                                   aTCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCg                                                                                                                   <  4:326027/148‑1 (MQ=255)                                        cGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGgc                                                                                                                 >  1:302429/1‑145 (MQ=255)                                               agcaAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTacac                                                                                                      >  3:289419/1‑149 (MQ=255)                                                  aaaaGCGAAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGt                                                                                                   >  5:253553/1‑149 (MQ=255)                                                          aGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGGCCTAGCGCAGAATGTACTGGAGCAGGCCCAGGTCTTTCGCGAGCTGGCCCAGGCCGacggtgtagatggcgccgaccttgagcggagcggtcagctgattcttgccggcctgg                                                                                           <  3:13300‑M1/149‑58 (MQ=255)                                                           gTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTa                                                                                          <  6:166988/149‑1 (MQ=255)                                                            tACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGa                                                                                                                                     <  8:73463/105‑1 (MQ=255)                                                            tACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTAc                                                                                         <  4:289419/149‑1 (MQ=255)                                                              cGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCTCTCAGCTCAAGGTCGGCGACATCTACACCGTCGGCCCCTACCt                                                                                       <  8:243979/149‑1 (MQ=255)                                                               gCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATc                                                                                                           <  8:134846/128‑1 (MQ=255)                                                                 cTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGtt                                                                                    >  6:235295/1‑149 (MQ=255)                                                                          gTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCt                                                                           <  6:253553/149‑1 (MQ=255)                                                                               cGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATcc                                                                      >  8:84000/1‑149 (MQ=255)                                                                                gAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATc                                                                       >  8:108783/1‑147 (MQ=255)                                                                                gAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATc                                                                       <  7:108783/147‑1 (MQ=255)                                                                                   aaCATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCg                                                                    >  7:154537/1‑147 (MQ=255)                                                                                         gtcgCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGgcgc                                                                                                               <  7:102877/98‑1 (MQ=255)                                                                                         gtcgCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGgcgc                                                                                                               >  8:102877/1‑98 (MQ=255)                                                                                              ccAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCt                                                                           <  8:293648/129‑1 (MQ=255)                                                                                              ccAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCt                                                                           >  7:293648/1‑129 (MQ=255)                                                                                               cAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGacggtgtagatggcgccgaccttgagcggagcggtcagctgattcttgccggcctgggccagctc                                                                                   <  7:276520‑M1/120‑66 (MQ=255)                                                                                               cAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGacggtgtagatggcgccgaccttgagcggagcggtcagctgattcttgccggcctgggccagctc                                                                                   >  8:276520‑M1/1‑55 (MQ=255)                                                                                                aaGCGCAGAAAGGACTGGTGCCTGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGTATCAGGTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCTCCTGATCCCGCAGCTGCACCGCGTg                                                     <  8:178575/149‑1 (MQ=255)                                                                                                                       gCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCCAGGTCGGCGCCATCTACACCGTCGGCCCATCCCTGTTCCCGACCCTGAAACCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACAt                              >  6:265423/1‑149 (MQ=255)                                                                                                                         ccAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACAt                              <  2:312108/147‑1 (MQ=255)                                                                                                                         ccAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACAt                              >  1:312108/1‑147 (MQ=255)                                                                                                                         ccAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCAGCTGTACATc                             >  4:20454/1‑148 (MQ=255)                                                                                                                           aGGGCATTCGCGAGCTGGCCCCGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCg                            >  7:322570/1‑147 (MQ=255)                                                                                                                             ggCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCCCCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCgaag                         >  3:189856/1‑148 (MQ=255)                                                                                                                                    gcgAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACtt                  >  8:153342/1‑148 (MQ=255)                                                                                                                                    gcgAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTc                 <  8:154537/149‑1 (MQ=255)                                                                                                                                    gcgAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTACACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACtt                  >  2:237526/1‑148 (MQ=255)                                                                                                                                    gcgAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTACACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTc                 <  1:237526/149‑1 (MQ=255)                                                                                                                                      gAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTcggcctgggccagctcgcgaatgccctgggcctgctccagtactttctgcgcttg                                            <  7:276520‑M2/120‑56 (MQ=255)                                                                                                                                      gAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTcggcctgggccagctcgcgaatgccctgggcctgctccagtactttctgcgcttg                                            >  8:276520‑M2/1‑65 (MQ=255)                                                                                                                                              ccAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTcggcctgggccagctcgcgaaagacctgggcctgctccagtacattctgcgctaggccgacgatgttttcgccgaccggggtcaggcgtact       <  3:13300‑M2/149‑93 (MQ=255)                                                                                                                                                 ggCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGc    <  5:235295/149‑1 (MQ=255)                                                                                                                                                    cGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGt  >  2:315571/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TGTGAAGAAGCTCGAGGACGAGCTTGGCGTTCTGATCTTCGAGCGCAGCAAAAGCGCAGTACGCCTGACCCCGGTCGGCGAAAACATCGTCGCCCAAGCGCAGAAAGTACTGGAGCAGGCCCAGGGCATTCGCGAGCTGGCCCAGGCCGGCAAGAATCAGCTGACCGCTCCGCTCAAGGTCGGCGCCATCTACACCGTCGGCCCCTACCTGTTCCCGCACCTGATCCCGCAGCTGCACCGCGTGGCGCCGCAAATGCCGCTGTACATCGAAGAAAACTTCACCCACGTACTGCGT  >  NC_002947/6055978‑6056272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.