New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 413617	31 (0.590)	4 (0.080)	3/240	NT	11.7%	coding (2571/2934 nt)	glnE	glutamate‑ammonia‑ligase adenylyltransferase
	?	NC_002947	= 413632	31 (0.620)					coding (2586/2934 nt)	glnE	glutamate‑ammonia‑ligase adenylyltransferase

GGGCCCGTGTGCTGGTGGGTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGGCCATA  >  NC_002947/413472‑413761                                                                                                                                                  |                                                                                                                                                 gggCCCGTGTGCTGGTGGGTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAg                                                                                                                                               <  4:152912/149‑1 (MQ=255)  ggCCCGTGTGCTGGTGGGTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAgg                                                                                                                                              <  4:64048/149‑1 (MQ=255)      cGTGTGCTGGTGGGTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGAc                                                                                                                                          >  2:53361/1‑149 (MQ=255)       gtgtGCTGGTGGGTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACg                                                                                                                                         <  1:232800/149‑1 (MQ=255)                   gTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCggtacc                                                                                                                             <  5:235008‑M2/149‑7 (MQ=255)                    ttGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACgg                                                                                                                                        <  7:254055/137‑1 (MQ=255)                    ttGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGGGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACgg                                                                                                                                        >  8:254055/1‑137 (MQ=255)                     tGCAAGCAGGGGGGGGCGGGATTCGACGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCggcagccgtcgccttggtaccga                                                                                                                           <  4:195827‑M1/149‑24 (MQ=255)                                 ggggCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCtt                                                                                                               <  4:338779/149‑1 (MQ=255)                                 ggggCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCt                                                                                                                <  1:53361/148‑1 (MQ=255)                                      ggcATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTcatc                                                                                                           >  2:175790/1‑145 (MQ=255)                                      ggcATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACg                                                                                                          >  2:320078/1‑149 (MQ=255)                                             gAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGgtg                                                                                                    >  2:285880/1‑148 (MQ=255)                                               aGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTAc                                                                                                 <  6:235008/149‑1 (MQ=255)                                                 gtgtGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTAccc                                                                                               >  5:215949/1‑149 (MQ=255)                                                    tgCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTc                                                                                            >  8:325810/1‑149 (MQ=255)                                                         gcCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCggcagccgtcgccttggtaccgag                                                                                                                          <  3:196125‑M1/114‑25 (MQ=255)                                                         gcCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCggcagccgtcgccttggtaccgag                                                                                                                          >  4:196125‑M1/1‑90 (MQ=255)                                                         gcCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGatat                                                                                       >  4:187259/1‑149 (MQ=255)                                                            aaGGTACTGGTCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTTAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCggcagccgtcgccttggtaccga                                                                                                                           <  2:177429‑M1/110‑24 (MQ=255)                                                               gTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCa                                                                                 <  1:320078/149‑1 (MQ=255)                                                                   tGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCACGGCGAACGCCTTCGACGCCGGTGTACCCTTCGa                                                                                          <  2:160088/136‑1 (MQ=255)                                                                             ccGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAAc                                                                                                                    >  8:234864/1‑100 (MQ=255)                                                                             ccGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAAc                                                                                                                    <  7:234864/100‑1 (MQ=255)                                                                                  aCCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTAtcgtc                                                              <  6:215949/149‑1 (MQ=255)                                                                                     tGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGa                                                            >  7:221607/1‑148 (MQ=255)                                                                                       gAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGatat                                                         <  3:187259/149‑1 (MQ=255)                                                                                         aaaGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATc                                                        >  4:14748/1‑148 (MQ=255)                                                                                                                      gcgcCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGcc                          >  6:320472/1‑149 (MQ=255)                                                                                                                        gcCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCcggc                                                                       <  4:201350/102‑1 (MQ=255)                                                                                                                        gcCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTg                        <  3:14748/149‑1 (MQ=255)                                                                                                                           aaGATGCGTGACAACCTCGGTAGCAAGGCGACGGCTGCCGGTACCGCGGCTAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTc                     <  7:325810/149‑1 (MQ=255)                                                                                                                                   tGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCAGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGAc              >  6:361370/1‑148 (MQ=255)                                                                                                                                    gACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGa                                                            >  1:99514/1‑101 (MQ=255)                                                                                                                                    gACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGa                                                            <  2:99514/101‑1 (MQ=255)                                                                                                                                       aaCCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATcc         >  2:20892/1‑149 (MQ=255)                                                                                                                                       aaCCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATcc         >  4:39559/1‑149 (MQ=255)                                                                                                                                         ccTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCgg       >  2:185593/1‑149 (MQ=255)                                                                                                                                          cTCGGTACCAAGGCGACGGCTGCCggtaccgaggttgtcacgcatcttggcgcgcatttcactcacctcgccgcgcagcttttccaggtcgcgggcctggcccagtaccttggc                                         >  4:196125‑M2/1‑24 (MQ=255)                                                                                                                                          cTCGGTACCAAGGCGACGGCTGCCggtaccgaggttgtcacgcatcttggcgcgcatttcactcacctcgccgcgcagcttttccaggtcgcgggcctggcccagtaccttggc                                         <  3:196125‑M2/114‑91 (MQ=255)                                                                                                                                           tCGGTACCAAGGCGACGGCTGCCggtaccgaggttgtcacgcatcttggcgcgcatttcactcacctcgccgcgcagcttttccaggtcgcgggcctggcccagtaccttggcgcgcacaccgtcgaatcccgcccccccctgcttgca     <  4:195827‑M2/149‑127 (MQ=255)                                                                                                                                           tCGGTACCAAGGCGACGGCTGCCggtaccgaggttgtcacgcatcttggcgcgcatttaactcacctcgccgcgcagcttttccaggtcgcgggcctggaccagtacctt                                            <  2:177429‑M2/110‑88 (MQ=255)                                                                                                                                             ggTACCggcagccgtcgccttggtaccgaggttgtcacgcatcttggcgcgcatttcactcacctcgccgcgcagcttttccaggtcgcgggcctggcccagtaccttggcgcgcacaccttcgaatgccgcccccacctgcttgcaac   <  5:235008‑M1/149‑144 (MQ=255)                                                                                                                                              gTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCGGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGGCCATa  <  5:361370/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GGGCCCGTGTGCTGGTGGGTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGGCCATA  >  NC_002947/413472‑413761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.