New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 413617	31 (0.590)	4 (0.080)	3/240	NT	11.7%	coding (2571/2934 nt)	glnE	glutamate‑ammonia‑ligase adenylyltransferase
	?	NC_002947	= 413632	31 (0.620)					coding (2586/2934 nt)	glnE	glutamate‑ammonia‑ligase adenylyltransferase

GTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGGCCATACTTCGATGGACCGA  >  NC_002947/413490‑413775                                                                                                                                               |                                                                                                                                                gTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCggtacc                                                                                                                                           <  5:235008‑M2/149‑7 (MQ=255)               ggggCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCtt                                                                                                                             <  4:338779/149‑1 (MQ=255)               ggggCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCt                                                                                                                              <  1:53361/148‑1 (MQ=255)                    ggcATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTcatc                                                                                                                         >  2:175790/1‑145 (MQ=255)                    ggcATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACg                                                                                                                        >  2:320078/1‑149 (MQ=255)                           gAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGgtg                                                                                                                  >  2:285880/1‑148 (MQ=255)                             aGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTAc                                                                                                               <  6:235008/149‑1 (MQ=255)                               gtgtGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTAccc                                                                                                             >  5:215949/1‑149 (MQ=255)                                  tgCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTc                                                                                                          >  8:325810/1‑149 (MQ=255)                                       gcCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGatat                                                                                                     >  4:187259/1‑149 (MQ=255)                                             gTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCa                                                                                               <  1:320078/149‑1 (MQ=255)                                                 tGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCACGGCGAACGCCTTCGACGCCGGTGTACCCTTCGa                                                                                                        <  2:160088/136‑1 (MQ=255)                                                           ccGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAAc                                                                                                                                  >  8:234864/1‑100 (MQ=255)                                                           ccGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAAc                                                                                                                                  <  7:234864/100‑1 (MQ=255)                                                                aCCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTAtcgtc                                                                            <  6:215949/149‑1 (MQ=255)                                                                   tGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGa                                                                          >  7:221607/1‑148 (MQ=255)                                                                     gAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGatat                                                                       <  3:187259/149‑1 (MQ=255)                                                                       aaaGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATc                                                                      >  4:14748/1‑148 (MQ=255)                                                                                                    gcgcCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGcc                                        >  6:320472/1‑149 (MQ=255)                                                                                                      gcCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCcggc                                                                                     <  4:201350/102‑1 (MQ=255)                                                                                                      gcCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTg                                      <  3:14748/149‑1 (MQ=255)                                                                                                         aaGATGCGTGACAACCTCGGTAGCAAGGCGACGGCTGCCGGTACCGCGGCTAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTc                                   <  7:325810/149‑1 (MQ=255)                                                                                                                 tGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCAGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGAc                            >  6:361370/1‑148 (MQ=255)                                                                                                                  gACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGa                                                                          <  2:99514/101‑1 (MQ=255)                                                                                                                  gACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGa                                                                          >  1:99514/1‑101 (MQ=255)                                                                                                                     aaCCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATcc                       >  4:39559/1‑149 (MQ=255)                                                                                                                     aaCCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATcc                       >  2:20892/1‑149 (MQ=255)                                                                                                                       ccTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCgg                     >  2:185593/1‑149 (MQ=255)                                                                                                                        cTCGGTACCAAGGCGACGGCTGCCggtaccgaggttgtcacgcatcttggcgcgcatttcactcacctcgccgcgcagcttttccaggtcgcgggcctggcccagtaccttggc                                                       >  4:196125‑M2/1‑24 (MQ=255)                                                                                                                        cTCGGTACCAAGGCGACGGCTGCCggtaccgaggttgtcacgcatcttggcgcgcatttcactcacctcgccgcgcagcttttccaggtcgcgggcctggcccagtaccttggc                                                       <  3:196125‑M2/114‑91 (MQ=255)                                                                                                                         tCGGTACCAAGGCGACGGCTGCCggtaccgaggttgtcacgcatcttggcgcgcatttcactcacctcgccgcgcagcttttccaggtcgcgggcctggcccagtaccttggcgcgcacaccgtcgaatcccgcccccccctgcttgca                   <  4:195827‑M2/149‑127 (MQ=255)                                                                                                                         tCGGTACCAAGGCGACGGCTGCCggtaccgaggttgtcacgcatcttggcgcgcatttaactcacctcgccgcgcagcttttccaggtcgcgggcctggaccagtacctt                                                          <  2:177429‑M2/110‑88 (MQ=255)                                                                                                                            gTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCGGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGGCCATa                <  5:361370/149‑1 (MQ=255)                                                                                                                                  aGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGGCCATACTTCGa          <  5:320472/149‑1 (MQ=255)                                                                                                                                  aGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGAAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGTCCATACt              >  2:315097/1‑145 (MQ=255)                                                                                                                                    gCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGGCCATACTTCGATg        >  3:147392/1‑149 (MQ=255)                                                                                                                                           cTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGGCCATACTTCGATGGACCGa  >  1:203038/1‑148 (MQ=255)                                                                                                                                               |                                                                                                                                                GTTGCAAGCAGGTGGGGGCGGCATTCGAAGGTGTGCGCGCCAAGGTACTGGGCCAGGCCCGCGACCTGGAAAAGCTGCGCGGCGAGGTGAGTGAAATGCGCGCCAAGATGCGTGACAACCTCGGTACCAAGGCGACGGCTGCCGGTACCGCGGCGAACGCCTTCGACGCCGGTGTACCCTTCGATATCAAGCAGGATGCCGGCGGTATCGTCGATATCGAATTTATGGTGCAATACGCCGCTTTGGCCTGGTCCCATGACCATCCGGCCATACTTCGATGGACCGA  >  NC_002947/413490‑413775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.