New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	928888 =	55 (1.040)	3 (0.060)	3/240	NT	6.3%	coding (16734/18933 nt)	PP_0806	surface adhesion protein
	?	NC_002947	928940 =	38 (0.760)					coding (16682/18933 nt)	PP_0806	surface adhesion protein

GATGACCGGCGCGTTGGCATCCACATCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCGGCAGCCGCAGGCGGGGTCAG  >  NC_002947/928741‑929019                                                                                                                                                    |                                                                                                                                    gctcagcgtcaccctcaccgacagcgccggtaatgtgtccacaggcactgcgctgaccgcaccggacctgaccccgcccgcggctgccggcaacctgctgttcagtgccgacggcggtaccctcaccggtactggcgaagtgggtgcCa                                                                                                                                    >  8:257289‑M1/148‑149 (MQ=255) gATGACCGGCGCGTTGGCATCCACATCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCa                                                                                                                                    >  4:35595/1‑149 (MQ=255)         gcgcGTTGGCATCCACATCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTcgcg                                                                                                                            <  3:35595/149‑1 (MQ=255)                ggCATCCACATCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTgc                                                                                                                      <  2:255970/148‑1 (MQ=255)                 gCATCCACATCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTgca                                                                                                                     <  7:296337/148‑1 (MQ=255)                   aTCCACATCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTgcagca                                                                                                                  >  2:209249/1‑149 (MQ=255)                   aTCCACATCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTgcagca                                                                                                                  >  8:231527/1‑149 (MQ=255)                      cacaTCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACgg                                                                                                               >  4:99694/1‑149 (MQ=255)                       acaTCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACgg                                                                                                               >  7:140458/1‑148 (MQ=255)                        caTCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCt                                                                                                                        <  4:23947/138‑1 (MQ=255)                        caTCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCt                                                                                                                        >  3:23947/1‑138 (MQ=255)                        caTCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTa                                                                                                             >  3:188272/1‑149 (MQ=255)                           ccGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTg                                                                                                                       >  6:203541/1‑136 (MQ=255)                           ccGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTg                                                                                                                       <  5:203541/136‑1 (MQ=255)                             ggTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTAccgcc                                                                                                        <  1:209249/149‑1 (MQ=255)                             ggTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTAccgcc                                                                                                        <  7:231527/149‑1 (MQ=255)                               tGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCgg                                                                                                      <  4:188272/149‑1 (MQ=255)                                    tgacgttgacgtTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTgc                                                                                                                      >  7:190494/1‑128 (MQ=255)                                    tgacgttgacgtTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTgc                                                                                                                      <  8:190494/128‑1 (MQ=255)                                     gtccacaggcactgcgctgaccgcaccggacctgaccccgcctgcggctgccggcaacctgctgttcagtgccgacggcggtaccctcaccggtactggcgaagtgggtgcCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGc                                                                                                <  6:182309‑M1/38‑1 (MQ=255)                                          tgacgttgCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTgc                                                                                                                      >  1:197165/1‑122 (MQ=255)                                          tgacgttgCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTgc                                                                                                                      <  2:197165/122‑1 (MQ=255)                                            acgttgCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTacgg                                                                                          <  8:140458/148‑1 (MQ=255)                                                 gCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTacggtgacgg                                                                                    >  5:244798/1‑149 (MQ=255)                                                   cgctgaccgcaccggacctgaccccgcctgcggctgccggcaacctgctgttcagtgccgacggcggtaccctcaccggtactggcgaagtgggtgcCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTacggtgacgg                                                                                    >  5:182309‑M1/98‑147 (MQ=255)                                                   ccGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTacggtgacggtg                                                                                  >  3:205922/1‑149 (MQ=255)                                                       gaccgcaccggacctgaccccgcctgcggctgccggcaacctgctgttcagtgccgacggcggtaccctcaccggtactggcgaagtgggtgcCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCAc                                                                              >  3:102672‑M1/94‑149 (MQ=255)                                                              ccGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTc                                                                       >  8:80665/1‑149 (MQ=255)                                                              ccGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTc                                                                       >  5:40233/1‑149 (MQ=255)                                                              ccGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTc                                                                       <  7:80665/149‑1 (MQ=255)                                                                gcgcgGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGc                                                                     <  6:40233/149‑1 (MQ=255)                                                                           tGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTacg                                                                                           >  4:257934/1‑116 (MQ=255)                                                                           tGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTacg                                                                                           <  3:257934/116‑1 (MQ=255)                                                                                 tCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCAcc                                                                             >  5:280147/1‑124 (MQ=255)                                                                                 tCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCAcc                                                                             <  6:280147/124‑1 (MQ=255)                                                                                 tCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTa                                                    >  3:232466/1‑149 (MQ=255)                                                                                   aCCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTAc                                                   <  6:244798/148‑1 (MQ=255)                                                                                    ccGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTAccg                                                 <  4:232466/149‑1 (MQ=255)                                                                                               tGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCa                                        <  4:37612/147‑1 (MQ=255)                                                                                               tGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCa                                        >  3:37612/1‑147 (MQ=255)                                                                                                ggCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACt                                      >  4:131762/1‑148 (MQ=255)                                                                                                 gCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCa                                        <  3:99694/145‑1 (MQ=255)                                                                                                 gCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTg                                     >  8:327342/1‑148 (MQ=255)                                                                                                  ccGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGaa                                   >  5:194644/1‑149 (MQ=255)                                                                                                        tCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAAcagcag                             >  7:304291/1‑149 (MQ=255)                                                                                                            gAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTg                         >  5:159879/1‑149 (MQ=255)                                                                                                             aGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTAcc                                                  <  3:285649/123‑1 (MQ=255)                                                                                                                 gggCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGt                                                     <  2:199060/116‑1 (MQ=255)                                                                                                                 gggCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGt                                                     >  1:199060/1‑116 (MQ=255)                                                                                                                  ggCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAAcagcag                             >  2:110479/1‑139 (MQ=255)                                                                                                                  ggCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCCCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAAcagcag                             <  1:110479/139‑1 (MQ=255)                                                                                                                     tCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCGGCAGcc                >  3:192331/1‑149 (MQ=255)                                                                                                                       aGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCGGCAGCCg               >  6:114470/1‑148 (MQ=255)                                                                                                                               ggTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCGGCAGCCGCAGGCgggg      >  4:55518/1‑149 (MQ=255)                                                                                                                                  gAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCGGCAGCCGCAGGCGGGGTCa   <  4:192331/149‑1 (MQ=255)                                                                                                                                   aaGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCGGCAGCCGCAGGCGGGGTCAg  <  6:194644/149‑1 (MQ=255)                                                                                                                                   aaGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCGGCAGCCGCAGGCGGGGTCAg  <  8:304291/149‑1 (MQ=255)                                                                                                                                      gTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGaa                                   >  8:99442/1‑113 (MQ=255)                                                                                                                                        gCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCg                      >  4:205280/1‑124 (MQ=255)                                                                                                                                        gCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCg                      <  3:205280/124‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                    GATGACCGGCGCGTTGGCATCCACATCCGGTGCAGTGACGTTGACGTTGCCCGACACGTTGCCGCGCGGGTCGCTGAGGGTCACCGAAAGGATCTGGCCGTTGTCCTGAGGCGGGCTCAGGGTCACGGTGAAGGTGCCGTCCGCCTGCACCGTCGCGGTCTGCAGCACGGTACCGCCGGCGCTGCGTACGGTGACGGTGGCACCCACTTCGCCAGTACCGGTGAGGGTACCGCCGTCGGCACTGAACAGCAGGTTGCCGGCAGCCGCAGGCGGGGTCAG  >  NC_002947/928741‑929019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.