New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1286951 =	38 (0.720)	3 (0.060)	3/240	NT	7.2%	coding (334/2145 nt)	PP_1125	putative Helicase
	?	NC_002947	1286997 =	42 (0.840)					coding (380/2145 nt)	PP_1125	putative Helicase

GGGCACCGGTACCGGCAAGACGGTAGCCTACAGCCTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTC  >  NC_002947/1286803‑1287094                                                                                                                                                     |                                                                                                                                                ccggcaagcttctcgatcatgctgttgaacagcttctggctgcgctcgtcgacttcgatgcggaagccttcttcctcgaacaactgggccgtggctgactgggcgtggccttcctgcaacaggatgtcgagcttggacaggcacagata                                                                                                                                                 >  5:142206‑M1/149‑149 (MQ=255)    cACCGGTACCGGCAAGACGGTAGCCTACAGCCTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCg                                                                                                                                              <  3:249097/149‑1 (MQ=255)                cAAGACGGTAGCCTACAGCCTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCa                                                                                                                                  <  3:263889/149‑1 (MQ=255)                         aGCCTACAGCCTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGccc                                                                                                                         >  1:66366/1‑149 (MQ=255)                             tACAGCCTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGc                                                                                                                     >  6:200264/1‑149 (MQ=255)                                  ccTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAgg                                                                                                                <  5:90929/149‑1 (MQ=255)                                  ccTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAgg                                                                                                                >  5:161045/1‑149 (MQ=255)                                   cTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACTCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTGAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAggg                                                                                                               <  8:271203/149‑1 (MQ=255)                                   cTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAggg                                                                                                               >  5:308182/1‑149 (MQ=255)                                           tttgccGGCGGCCTTGGCCGCCGGGAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAgg                                                                                                                >  3:268290/5‑140 (MQ=255)                                           tttgccGGCGGCCTTGGCCGCCGGGAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAgg                                                                                                                <  4:268290/136‑1 (MQ=255)                                           cATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGcc                                                                                                       <  2:66366/149‑1 (MQ=255)                                                   gacttcgatgcggaagccttcttcctcgaacaactgggccgtggctgactgggcgtggccttcctgcaacaggatgtcgagcttggacaggcacagatAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCt                                                                                                >  2:147509‑M1/99‑148 (MQ=255)                                                      ttcgatgcggaagccttcttcctcgaacaactgggccgtggctgactgggcgtggccttcctgcaacaggatgtcgagcttggacaggcacagatAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTAt                                                                                                  <  5:162165‑M1/48‑1 (MQ=255)                                                      ttcgatgcggaagccttcttcctcgaacaactgggccgtggctgactgggcgtggccttcctgcaacaggatgtcgagcttggacaggcacagatAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTAt                                                                                                  >  6:162165‑M1/96‑143 (MQ=255)                                                      ccAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGc                                                                                            <  6:308182/149‑1 (MQ=255)                                                            ccgccgGCAAGCGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTc                                                                                       >  2:128645/1‑148 (MQ=255)                                                             cgccgGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTcc                                                                                      >  3:239424/1‑148 (MQ=255)                                                                cgGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACtt                                                                                                                                    <  2:169043/99‑1 (MQ=255)                                                                cgGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACtt                                                                                                                                    >  1:169043/1‑99 (MQ=255)                                                                    aaaCGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGa                                                                              <  6:161045/149‑1 (MQ=255)                                                                        gCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATc                                                                          <  5:200264/149‑1 (MQ=255)                                                                            ggTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTg                                                                                                                       >  8:45881/1‑100 (MQ=255)                                                                            ggTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTg                                                                                                                       <  7:45881/100‑1 (MQ=255)                                                                                    ccACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAgg                                                                >  6:66706/1‑147 (MQ=255)                                                                                        ggCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGc                                                           >  8:334797/1‑148 (MQ=255)                                                                                                         aGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACg                                         >  6:256031/1‑149 (MQ=255)                                                                                                          ggAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACgg                                        <  1:128645/149‑1 (MQ=255)                                                                                                           gAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGc                                       >  4:223056/1‑149 (MQ=255)                                                                                                            aaCAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGcc                                      <  5:66706/149‑1 (MQ=255)                                                                                                               aGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAg                                   >  6:85458/1‑149 (MQ=255)                                                                                                                   cGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTc                                                                                >  7:105052/1‑100 (MQ=255)                                                                                                                   cGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTc                                                                                <  8:105052/100‑1 (MQ=255)                                                                                                                    gTCTTCAAGGACCTGCCCGACCTGATGCACAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAgttgtt                              >  8:282192/1‑149 (MQ=255)                                                                                                                       ttCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTc                             >  7:318663/1‑147 (MQ=255)                                                                                                                         cAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAg                          <  5:256031/148‑1 (MQ=255)                                                                                                                                cTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTgg                                                                                                         >  6:322624/1‑62 (MQ=255)                                                                                                                                cTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTgg                                                                                                         <  5:322624/62‑1 (MQ=255)                                                                                                                                cTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAgg                  >  6:88898/1‑149 (MQ=255)                                                                                                                                 tGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGc                 >  5:292489/1‑149 (MQ=255)                                                                                                                                     cGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTcc             >  8:139942/1‑149 (MQ=255)                                                                                                                                           gATGCGCAGCAGCGGCCTCAACTTCCGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATc        >  2:76069/1‑148 (MQ=255)                                                                                                                                             tGCACAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGaa     <  7:282192/149‑1 (MQ=255)                                                                                                                                                gcagcaGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTc  <  3:223056/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                GGGCACCGGTACCGGCAAGACGGTAGCCTACAGCCTGGCTGCCATCCCGGCGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTC  >  NC_002947/1286803‑1287094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.