New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1286951 =	38 (0.720)	3 (0.060)	3/240	NT	7.2%	coding (334/2145 nt)	PP_1125	putative Helicase
	?	NC_002947	1286997 =	42 (0.840)					coding (380/2145 nt)	PP_1125	putative Helicase

CGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTCAACAGCATGATCGAGAAGCTTGCCGG  >  NC_002947/1286853‑1287144                                                                                                                                                 |                                                                                                                                                    gacttcgatgcggaagccttcttcctcgaacaactgggccgtggctgactgggcgtggccttcctgcaacaggatgtcgagcttggacaggcacagatAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCt                                                                                                                                                  >  2:147509‑M1/99‑148 (MQ=255)    ttcgatgcggaagccttcttcctcgaacaactgggccgtggctgactgggcgtggccttcctgcaacaggatgtcgagcttggacaggcacagatAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTAt                                                                                                                                                    >  6:162165‑M1/96‑143 (MQ=255)    ttcgatgcggaagccttcttcctcgaacaactgggccgtggctgactgggcgtggccttcctgcaacaggatgtcgagcttggacaggcacagatAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTAt                                                                                                                                                    <  5:162165‑M1/48‑1 (MQ=255)    ccAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGc                                                                                                                                              <  6:308182/149‑1 (MQ=255)          ccgccgGCAAGCGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTc                                                                                                                                         >  2:128645/1‑148 (MQ=255)           cgccgGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTcc                                                                                                                                        >  3:239424/1‑148 (MQ=255)                  aaaCGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGa                                                                                                                                <  6:161045/149‑1 (MQ=255)                      gCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATc                                                                                                                            <  5:200264/149‑1 (MQ=255)                                  ccACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAgg                                                                                                                  >  6:66706/1‑147 (MQ=255)                                      ggCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGc                                                                                                             >  8:334797/1‑148 (MQ=255)                                                       aGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACg                                                                                           >  6:256031/1‑149 (MQ=255)                                                        ggAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACgg                                                                                          <  1:128645/149‑1 (MQ=255)                                                         gAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGc                                                                                         >  4:223056/1‑149 (MQ=255)                                                          aaCAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGcc                                                                                        <  5:66706/149‑1 (MQ=255)                                                             aGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAg                                                                                     >  6:85458/1‑149 (MQ=255)                                                                 cGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTc                                                                                                                                  >  7:105052/1‑100 (MQ=255)                                                                 cGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTc                                                                                                                                  <  8:105052/100‑1 (MQ=255)                                                                  gTCTTCAAGGACCTGCCCGACCTGATGCACAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAgttgtt                                                                                >  8:282192/1‑149 (MQ=255)                                                                     ttCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTc                                                                               >  7:318663/1‑147 (MQ=255)                                                                       cAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAg                                                                            <  5:256031/148‑1 (MQ=255)                                                                              cTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAgg                                                                    >  6:88898/1‑149 (MQ=255)                                                                               tGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGc                                                                   >  5:292489/1‑149 (MQ=255)                                                                                   cGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTcc                                                               >  8:139942/1‑149 (MQ=255)                                                                                         gATGCGCAGCAGCGGCCTCAACTTCCGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATc                                                          >  2:76069/1‑148 (MQ=255)                                                                                           tGCACAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGaa                                                       <  7:282192/149‑1 (MQ=255)                                                                                              gcagcaGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTc                                                    <  3:223056/149‑1 (MQ=255)                                                                                               agatagcggccacggcccttggccagggcgaagctgaagttgaggccgctATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTc                                                    >  2:147509‑M2/51‑148 (MQ=255)                                                                                                 atagcggccacggcccttggccagggcgaagctgaagttgaggccgctATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGaa                                                       <  5:162165‑M2/95‑1 (MQ=255)                                                                                                 atagcggccacggcccttggccagggcgaagctgaagttgaggccgctATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGaa                                                       >  6:162165‑M2/49‑143 (MQ=255)                                                                                                     CGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAgc                                             >  7:334797‑M1/1‑149 (MQ=255)                                                                                                     CGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAgc                                             >  5:85458‑M1/1‑149 (MQ=255)                                                                                                           cAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCtt                                                                 <  5:362132/123‑1 (MQ=255)                                                                                                           cAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCtt                                                                 >  6:362132/1‑123 (MQ=255)                                                                                                            aaCTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGc                                        <  7:139942/147‑1 (MQ=255)                                                                                                            aaCTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCa                                      <  4:239424/149‑1 (MQ=255)                                                                                                            aaCTTCAGCTTCGCCCTGACCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGc                                        >  7:29146/1‑147 (MQ=255)                                                                                                               ttCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAg                                     >  3:104263/1‑147 (MQ=255)                                                                                                                 cAGCTTCGCCCTGGCCAAGTGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCATCCAGAAg                                  <  8:318663/148‑1 (MQ=255)                                                                                                                  aGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCt                                <  4:104263/149‑1 (MQ=255)                                                                                                                      tCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGtt                             >  1:186986/1‑148 (MQ=255)                                                                                                                       cGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTc                            <  5:156053/148‑1 (MQ=255)                                                                                                                         cccTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGaa                                                       >  7:53064/1‑119 (MQ=255)                                                                                                                         cccTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGaa                                                       <  8:53064/119‑1 (MQ=255)                                                                                                                          ccTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCTAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGcc                                                                                        >  6:244612/1‑85 (MQ=255)                                                                                                                          ccTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCTAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGcc                                                                                        <  5:244612/85‑1 (MQ=255)                                                                                                                          ccTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTCAACa                        <  6:292489/149‑1 (MQ=255)                                                                                                                           cTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTCAACAg                       >  6:202377/1‑149 (MQ=255)                                                                                                                               ccAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTCAACa                        <  4:252874/144‑1 (MQ=255)                                                                                                                               ccAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTCAACa                        >  3:252874/1‑144 (MQ=255)                                                                                                                                  aGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTCAACAGCATGATc                <  2:186986/149‑1 (MQ=255)                                                                                                                                      ccGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTCAACAGCATGATCgaga            <  5:202377/149‑1 (MQ=255)                                                                                                                                                tATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTCAACAGCATGATCGAGAAGCTTGCCgg  >  5:142206‑M2/2‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CGGCCAAGGCCGCCGGCAAACGCCTGGTGATCGCCACGGCCACCGTGGCCCTGCAGGAACAGATCGTCTTCAAGGACCTGCCCGACCTGATGCGCAGCAGCGGCCTCAACTTCAGCTTCGCCCTGGCCAAGGGCCGTGGCCGCTATCTGTGCCTGTCCAAGCTCGACATCCTGTTGCAGGAAGGCCACGCCCAGTCAGCCACGGCCCAGTTGTTCGAGGAAGAAGGCTTCCGCATCGAAGTCGACGAGCGCAGCCAGAAGCTGTTCAACAGCATGATCGAGAAGCTTGCCGG  >  NC_002947/1286853‑1287144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.