New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1682222	36 (0.680)	4 (0.080)	3/236	NT	9.0%	coding (741/1710 nt)	recJ	ssDNA‑specific exonuclease RecJ
	?	NC_002947	= 1682252	47 (0.960)					coding (771/1710 nt)	recJ	ssDNA‑specific exonuclease RecJ

CGCGCTCGCTTGCGCAGCCTTGGGCGCTACGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATGCCGCCGGGCGCCTGGACGACATGAGCCTGG  >  NC_002947/1682076‑1682370                                                                                                                                                   |                                                                                                                                                     cgcgcTCGCTTGCGCAGCCTTGGGCGCTACGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAgc                                                                                                                                                     <  5:320177/148‑1 (MQ=255) cgcgcTCGCTTGCGCAGCCTTGGGCGCTACGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAgc                                                                                                                                                     <  3:223573/148‑1 (MQ=255)      tcgctTGCGCAGCCTTGGGCGCTACGAGGCGCAGCCACAGCCGTACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATcc                                                                                                                                               >  5:92219/1‑149 (MQ=255)                  ccTTGGGCGCTACGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAG                                                                                                                                                      >  4:246172‑M1/1‑130 (MQ=255)                  ccTTGGGCGCTACGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAG                                                                                                                                                      >  4:246454‑M1/1‑130 (MQ=255)                  ccTTGGGCGCTACGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAG                                                                                                                                                      <  3:246454‑M1/130‑1 (MQ=255)                  ccTTGGGCGCTACGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAG                                                                                                                                                      <  3:246172‑M1/130‑1 (MQ=255)                        gcgcTACGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCTGCgcccggc                                                                                                                             >  8:205320/1‑149 (MQ=255)                              cGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCccggcccggc                                                                                                                        <  1:6339/148‑1 (MQ=255)                                aGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGcgcatccgggccgggcgcggccggcgcggatgc                                                                                                                     <  7:5309‑M1/149‑34 (MQ=255)                                    gcAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCctcaagg                                                                                                                 >  4:257062‑M2/1‑142 (MQ=255)                                       gCCACAGCCGAACATTGGCGACCTGCTCGCTCTGGTGGCGCTGGGCAGTGGTGCTGACGTGGGGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGgccgggccgggcgcggccggcgcggatgcgctcaaggcct                                                                                                              <  3:226673‑M1/149‑41 (MQ=255)                                           caGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCt                                                                                                          >  1:85178/1‑149 (MQ=255)                                              ccGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCtt                                                                                                         >  2:38604/1‑147 (MQ=255)                                              ccGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGa                                                                                                       <  2:85178/149‑1 (MQ=255)                                                 aaCATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCAt                                                                                                             <  2:207757/140‑1 (MQ=255)                                                 aaCATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCAt                                                                                                             >  1:207757/1‑140 (MQ=255)                                                        gCGAACTGCTAGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTggcgcgg                                                                                             >  7:8655/1‑149 (MQ=255)                                                           aaCTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGGCATCCTTGAGGTggcgcggcgc                                                                                          <  8:8655/149‑1 (MQ=255)                                                           aaCTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTggcgcggcgc                                                                                          <  4:140190/149‑1 (MQ=255)                                                           aaCTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTggcgcggcgc                                                                                          <  6:92219/149‑1 (MQ=255)                                                              tGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCTTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGAt                                                                                       >  3:248826/1‑149 (MQ=255)                                                                 tCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCAc                                                                                    >  4:98153/1‑149 (MQ=255)                                                                   gATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCg                                                                                  >  6:90378/1‑149 (MQ=255)                                                                               cTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTc                                                                      >  3:270848/1‑149 (MQ=255)                                                                                 gggCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGgccgggccgggcgcggccggcgcggatgcgctcaaggccttggt                                                                                                          >  8:144829‑M1/1‑67 (MQ=255)                                                                                 gggCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGgccgggccgggcgcggccggcgcggatgcgctcaaggccttggt                                                                                                          <  7:144829‑M1/111‑45 (MQ=255)                                                                                  ggCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGTCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGAc                                                                   <  5:90378/149‑1 (MQ=255)                                                                                      gtggtgCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCTGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGAc                                                               <  7:205320/149‑1 (MQ=255)                                                                                                 gtggtgCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCAt                                                    >  5:63751/1‑149 (MQ=255)                                                                                                       ccGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCgg                                              <  3:98153/149‑1 (MQ=255)                                                                                                       ccGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCAGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCgg                                              >  2:196998/1‑149 (MQ=255)                                                                                                         gCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGtt                                                        <  8:324894/137‑1 (MQ=255)                                                                                                         gCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGtt                                                        >  7:324894/1‑137 (MQ=255)                                                                                                              aTGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCAGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACgg                                       <  1:196998/149‑1 (MQ=255)                                                                                                                      aacCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGgc                                                                                >  3:185724/1‑100 (MQ=255)                                                                                                                      aacCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGgc                                                                                <  4:185724/100‑1 (MQ=255)                                                                                                                        ccGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATgccg                             >  5:331004/1‑149 (MQ=255)                                                                                                                         cGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATgccgc                            >  4:135854/1‑149 (MQ=255)                                                                                                                                  gTGCACCAAGGCTTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATGCCGCCGGGCGCCt                   <  4:248826/149‑1 (MQ=255)                                                                                                                                    gCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCGTCGGCCCACGGTTGAATGCCGCCGGGCGCCTg                  >  4:90404/1‑148 (MQ=255)                                                                                                                                      aCCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCctcaaggccttggtgcaccaggatgcggttgttggcatccagcggcaccacgtcagcaacactgccc                                                     <  7:144829‑M2/111‑68 (MQ=255)                                                                                                                                      aCCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCctcaaggccttggtgcaccaggatgcggttgttggcatccagcggcaccacgtcagcaacactgccc                                                     >  8:144829‑M2/1‑44 (MQ=255)                                                                                                                                      aCCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAAt                                 >  6:88938/1‑131 (MQ=255)                                                                                                                                      aCCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAAt                                 <  5:88938/131‑1 (MQ=255)                                                                                                                                        cAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATGCCGCCGGGCGCCTGgacga             <  6:63751/149‑1 (MQ=255)                                                                                                                                          aGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCctcaaggccttggtgcaccaggatgcggttgttggcatccagcggccccacgtcagcaccactgcccagcgccaccagagcgagcaggtcgccaatgttcggctgtggc           <  3:226673‑M2/149‑110 (MQ=255)                                                                                                                                          aGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATGCCGCCGGGCGCCTGGACGACa           <  8:215387/149‑1 (MQ=255)                                                                                                                                             ccTTGAGgccgggccgggcgcggccggcgcggatgcgctcaaggccttggtgcaccaggatgcggttgttggcatccagcggcaccacgtcagcaacactgcccagcgccaccagatcgagcagttcgccaatgttcggctgtggctgc        >  4:257062‑M1/1‑7 (MQ=255)                                                                                                                                             ccTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATGCCGCCGGGCGCCTGGACGACAt          >  8:278459/1‑147 (MQ=255)                                                                                                                                              cTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATGCCGCCGGGCGCCTGGACGACATGAg       >  8:270576/1‑149 (MQ=255)                                                                                                                                                   gcgcATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATGCCGCCGGGCGCCTGGACGACATGAGCCTgg  >  4:54915/1‑149 (MQ=255)                                                                                                                                                   gcgcATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATGCCGCCGGGCGCCTGGACGACATGAGCCTgg  <  1:38604/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     CGCGCTCGCTTGCGCAGCCTTGGGCGCTACGAGGCGCAGCCACAGCCGAACATTGGCGAACTGCTCGATCTGGTGGCGCTGGGCAGTGTTGCTGACGTGGTGCCGCTGGATGCCAACAACCGCATCCTGGTGCACCAAGGCCTTGAGCGCATCCGCGCCGGCCGCGCCCGGCCCGGCCTCAAGGCCATCCTTGAGGTGGCGCGGCGCGATCACCGGCGCATCACTTCGACTGACCTTGGTTTCATCCTCGGCCCACGGTTGAATGCCGCCGGGCGCCTGGACGACATGAGCCTGG  >  NC_002947/1682076‑1682370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.