New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1710542	44 (0.830)	3 (0.060)	3/246	NT	6.3%	coding (1161/2628 nt)	ppc	phosphoenolpyruvate carboxylase
	?	NC_002947	= 1710566	47 (0.920)					coding (1185/2628 nt)	ppc	phosphoenolpyruvate carboxylase

CCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCC  >  NC_002947/1710397‑1710687                                                                                                                                                  |                                                                                                                                                  ccGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGgccgc                                                                                                                                                >  1:246108/1‑149 (MQ=255)  cGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGgccgcc                                                                                                                                               >  2:167865/1‑149 (MQ=255)    aCGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGGGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTg                                                                                                                                             <  6:351119/149‑1 (MQ=255)        gCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACg                                                                                                                                         >  5:91627/1‑149 (MQ=255)               gACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCa                                                                                                                                  <  2:312056/149‑1 (MQ=255)                    ccGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACg                                                                                                                             <  2:246108/149‑1 (MQ=255)                          gCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTgccc                                                                                                                       >  5:116991‑M2/1‑145 (MQ=255)                           cTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCg                                                                                                                      >  2:186696/1‑149 (MQ=255)                            tGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTgg                                                                                                                                            <  6:25034/126‑1 (MQ=255)                              aTCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCa                                                                                                                   >  7:49743/1‑149 (MQ=255)                                 gcgcCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCg                                                                                                                >  8:141058/1‑149 (MQ=255)                                   gccgcTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCagcgtcctggcgtacgtccaggcggcccaggaacagg                                                                                                              <  8:260009‑M1/149‑38 (MQ=255)                                                tgCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCagcgtcctggcgtacgtccaggcggcccag                                                                                                                     <  8:92103‑M1/129‑31 (MQ=255)                                                tgCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCagcgtcctggcgtacgtccaggcggcccag                                                                                                                     >  7:92103‑M1/1‑99 (MQ=255)                                                  cTACCAGTCACTGTACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGAcc                                                                                                   >  1:152305/1‑145 (MQ=255)                                                   tACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATg                                                                                                           >  6:92481/1‑136 (MQ=255)                                                   tACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATg                                                                                                           <  5:92481/136‑1 (MQ=255)                                                      cAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAAc                                                                                           <  2:254315/149‑1 (MQ=255)                                                           aCTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGgccgcc                                                                                                                                               >  6:336044/1‑92 (MQ=255)                                                           aCTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGgccgcc                                                                                                                                               <  5:336044/92‑1 (MQ=255)                                                           aCTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGt                                                                                                               <  3:38365/124‑1 (MQ=255)                                                           aCTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGt                                                                                                               >  4:38365/1‑124 (MQ=255)                                                           aCTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGAtt                                                                                      <  8:49743/149‑1 (MQ=255)                                                                  gAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAAcc                                                                                          <  2:100014/138‑1 (MQ=255)                                                                  gAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAAcc                                                                                          >  1:100014/1‑138 (MQ=255)                                                                  gAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcctggg                                                                               >  2:35997/1‑149 (MQ=255)                                                                       cGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcctgggcctgg                                                                          <  1:167865/149‑1 (MQ=255)                                                                              ggCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGtt                                                                    <  8:246555/148‑1 (MQ=255)                                                                               gCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCgcggg                                                                  >  5:136597/1‑145 (MQ=255)                                                                                      cGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcc                                                                                   <  5:139989/125‑1 (MQ=255)                                                                                      cGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcc                                                                                   >  6:139989/1‑125 (MQ=255)                                                                                       gCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACt                                                           <  1:35997/148‑1 (MQ=255)                                                                                        ccGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTgg                                                         >  4:13697/1‑149 (MQ=255)                                                                                         cGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTgg                                                         >  1:241693/1‑148 (MQ=255)                                                                                              ggCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATgag                                                   <  2:152305/149‑1 (MQ=255)                                                                                               gCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcct                                                                                  >  5:274924/1‑117 (MQ=255)                                                                                               gCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcct                                                                                  <  6:274924/117‑1 (MQ=255)                                                                                                             gCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATc                                       <  5:72151/146‑1 (MQ=255)                                                                                                             gCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATc                                       >  6:72151/1‑146 (MQ=255)                                                                                                               ttGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCt                                                                                                                           >  8:202644/1‑60 (MQ=255)                                                                                                               ttGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCt                                                                                                                           <  7:202644/60‑1 (MQ=255)                                                                                                                 gCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtcc                                >  2:243390/1‑149 (MQ=255)                                                                                                                 gCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtcc                                >  8:137564/1‑149 (MQ=255)                                                                                                                  cgtcgtGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtcct                               <  3:13697/149‑1 (MQ=255)                                                                                                                      gtGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGcc                                                               >  4:1083/1‑113 (MQ=255)                                                                                                                      gtGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGcc                                                               <  3:1083/113‑1 (MQ=255)                                                                                                                       tGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATcgcg                                    >  1:242071/1‑139 (MQ=255)                                                                                                                       tGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATcgcg                                    <  2:242071/139‑1 (MQ=255)                                                                                                                          ggTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtc                                 >  3:342210/1‑139 (MQ=255)                                                                                                                          ggTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtc                                 <  4:342210/139‑1 (MQ=255)                                                                                                                              aCCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCt                   <  7:137564/149‑1 (MQ=255)                                                                                                                                cTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTg                  >  7:131708/1‑148 (MQ=255)                                                                                                                                      ccTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTgcccaggaacaggccgaaggtcaccgcacgacgcaagcagtcgagcagcggcccctcggcgatcacgcccataccgcattcgtgcagtgactggtagcacagctccagcggc           <  8:260009‑M2/149‑113 (MQ=255)                                                                                                                                             cTGGGCCGCCTGGACGTACGCCAGGACGCTgcccaggaacaggccgaaggtcaccgcacgacgcaagcagtcgagcagcggcccctcggcgatcacgcccataccgcattcgtgcagtgactggtagca                        >  7:92103‑M2/1‑30 (MQ=255)                                                                                                                                             cTGGGCCGCCTGGACGTACGCCAGGACGCTgcccaggaacaggccgaaggtcaccgcacgacgcaagcagtcgagcagcggcccctcggcgatcacgcccataccgcattcgtgcagtgactggtagca                        <  8:92103‑M2/129‑100 (MQ=255)                                                                                                                                               gggCagcgtcctggcgtacgtccaggcggcccaggaacaggccgaaggtcaccgcacgacgcaagcagtcgagcagcggcccctcggcgatcacgcccataccgcattcgtgcagtgactggtagcacagctccagcggcgcgatcagc  >  5:116991‑M1/1‑4 (MQ=255)                                                                                                                                                  ccgccTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGATAAACCGCCGGccc   <  4:45397/145‑1 (MQ=255)                                                                                                                                                  ccgccTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAGAAACCGCCGGccc   >  3:45397/1‑145 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CCGACGTGCTGGTGGACAACCGCGAGCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCC  >  NC_002947/1710397‑1710687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.