New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1710542	44 (0.830)	3 (0.060)	3/246	NT	6.3%	coding (1161/2628 nt)	ppc	phosphoenolpyruvate carboxylase
	?	NC_002947	= 1710566	47 (0.920)					coding (1185/2628 nt)	ppc	phosphoenolpyruvate carboxylase

GCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGCTGCCTGCGCATTTCAAGCCGCAAG  >  NC_002947/1710422‑1710714                                                                                                                                                 |                                                                                                                                                     gCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTgccc                                                                                                                                                  >  5:116991‑M2/1‑145 (MQ=255)  cTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCg                                                                                                                                                 >  2:186696/1‑149 (MQ=255)     aTCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCa                                                                                                                                              >  7:49743/1‑149 (MQ=255)        gcgcCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCg                                                                                                                                           >  8:141058/1‑149 (MQ=255)                         cTACCAGTCACTGTACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGAcc                                                                                                                              >  1:152305/1‑145 (MQ=255)                          tACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATg                                                                                                                                      >  6:92481/1‑136 (MQ=255)                          tACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATg                                                                                                                                      <  5:92481/136‑1 (MQ=255)                             cAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAAc                                                                                                                      <  2:254315/149‑1 (MQ=255)                                  aCTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGt                                                                                                                                          >  4:38365/1‑124 (MQ=255)                                  aCTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGt                                                                                                                                          <  3:38365/124‑1 (MQ=255)                                  aCTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGAtt                                                                                                                 <  8:49743/149‑1 (MQ=255)                                         gAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAAcc                                                                                                                     <  2:100014/138‑1 (MQ=255)                                         gAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAAcc                                                                                                                     >  1:100014/1‑138 (MQ=255)                                         gAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcctggg                                                                                                          >  2:35997/1‑149 (MQ=255)                                              cGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcctgggcctgg                                                                                                     <  1:167865/149‑1 (MQ=255)                                                     ggCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGtt                                                                                               <  8:246555/148‑1 (MQ=255)                                                      gCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCgcggg                                                                                             >  5:136597/1‑145 (MQ=255)                                                             cGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcc                                                                                                              >  6:139989/1‑125 (MQ=255)                                                             cGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcc                                                                                                              <  5:139989/125‑1 (MQ=255)                                                              gCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACt                                                                                      <  1:35997/148‑1 (MQ=255)                                                               ccGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTgg                                                                                    >  4:13697/1‑149 (MQ=255)                                                                cGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTgg                                                                                    >  1:241693/1‑148 (MQ=255)                                                                     ggCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATgag                                                                              <  2:152305/149‑1 (MQ=255)                                                                      gCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcct                                                                                                             <  6:274924/117‑1 (MQ=255)                                                                      gCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTAcct                                                                                                             >  5:274924/1‑117 (MQ=255)                                                                                    gCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATc                                                                  >  6:72151/1‑146 (MQ=255)                                                                                    gCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATc                                                                  <  5:72151/146‑1 (MQ=255)                                                                                      ttGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCt                                                                                                                                                      <  7:202644/60‑1 (MQ=255)                                                                                      ttGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCt                                                                                                                                                      >  8:202644/1‑60 (MQ=255)                                                                                        gCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtcc                                                           >  8:137564/1‑149 (MQ=255)                                                                                        gCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtcc                                                           >  2:243390/1‑149 (MQ=255)                                                                                         cgtcgtGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtcct                                                          <  3:13697/149‑1 (MQ=255)                                                                                             gtGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGcc                                                                                          <  3:1083/113‑1 (MQ=255)                                                                                             gtGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGcc                                                                                          >  4:1083/1‑113 (MQ=255)                                                                                              tGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATcgcg                                                               <  2:242071/139‑1 (MQ=255)                                                                                              tGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATcgcg                                                               >  1:242071/1‑139 (MQ=255)                                                                                                 ggTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtc                                                            <  4:342210/139‑1 (MQ=255)                                                                                                 ggTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTtc                                                            >  3:342210/1‑139 (MQ=255)                                                                                                     aCCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCt                                              <  7:137564/149‑1 (MQ=255)                                                                                                       cTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTg                                             >  7:131708/1‑148 (MQ=255)                                                                                                             ccTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTgcccaggaacaggccgaaggtcaccgcacgacgcaagcagtcgagcagcggcccctcggcgatcacgcccataccgcattcgtgcagtgactggtagcacagctccagcggc                                      <  8:260009‑M2/149‑113 (MQ=255)                                                                                                                    cTGGGCCGCCTGGACGTACGCCAGGACGCTgcccaggaacaggccgaaggtcaccgcacgacgcaagcagtcgagcagcggcccctcggcgatcacgcccataccgcattcgtgcagtgactggtagca                                                   >  7:92103‑M2/1‑30 (MQ=255)                                                                                                                    cTGGGCCGCCTGGACGTACGCCAGGACGCTgcccaggaacaggccgaaggtcaccgcacgacgcaagcagtcgagcagcggcccctcggcgatcacgcccataccgcattcgtgcagtgactggtagca                                                   <  8:92103‑M2/129‑100 (MQ=255)                                                                                                                         ccgccTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGATAAACCGCCGGccc                              <  4:45397/145‑1 (MQ=255)                                                                                                                         ccgccTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAGAAACCGCCGGccc                              >  3:45397/1‑145 (MQ=255)                                                                                                                          cgccTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAg                                                <  1:209399/126‑1 (MQ=255)                                                                                                                          cgccTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAg                                                >  2:209399/1‑126 (MQ=255)                                                                                                                           gccTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCCCCAGGCCGAGCTGAAAAACCGCCGGCCCctcctg                        >  7:57559/1‑149 (MQ=255)                                                                                                                                gACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGctgcctg                    <  2:241693/148‑1 (MQ=255)                                                                                                                                gACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGctgcct                     <  7:51755/147‑1 (MQ=255)                                                                                                                                       gCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGCTGCCTGCGCATTTc            <  6:91627/149‑1 (MQ=255)                                                                                                                                         cAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGCTGCCTGCGCATTTCaa          <  8:131708/149‑1 (MQ=255)                                                                                                                                         cAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGCTGCCTGCGCATTTCaa          >  3:101998/1‑149 (MQ=255)                                                                                                                                           ggACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGCTGCCTGCGCATTTCAAGc        >  3:256640/1‑149 (MQ=255)                                                                                                                                            gACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGCTGCCTGCGCATTTCAAGcc       >  7:316872/1‑149 (MQ=255)                                                                                                                                                 tGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGCTGCCTGCGCATTTCAAGCCGCAAg  >  5:198573/1‑149 (MQ=255)                                                                                                                                                 tGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGCTGCCTGCGCATTTCAAGCCGCAAg  >  8:206463/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GCTGATCGCGCCGCTGGAGCTGTGCTACCAGTCACTGCACGAATGCGGTATGGGCGTGATCGCCGAGGGGCCGCTGCTCGACTGCTTGCGTCGTGCGGTGACCTTCGGCCTGTTCCTGGGCCGCCTGGACGTACGCCAGGACGCTGCCCGCCACCGTGATGCGCTGACCGAGATAACCGATTACCTGGGCCTGGGGCGTTACGCCGACTGGGATGAGGAGCAGCGCATCGCGTTCCTCCAGGCCGAGCTGAAAAACCGCCGGCCCCTGCTGCCTGCGCATTTCAAGCCGCAAG  >  NC_002947/1710422‑1710714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.