New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2735070 | 42 (0.800) | 3 (0.060) | 3/242 | NT | 7.1% | coding (1968/4422 nt) | PP_2394 | leucine‑rich repeat‑containing protein |
? | NC_002947 | = 2735102 | 39 (0.780) | coding (2000/4422 nt) | PP_2394 | leucine‑rich repeat‑containing protein |
TGGCCGACCGCCGGAGGCCGCGCTGCTCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCCGC > NC_002947/2734923‑2735216 | tGGCCGACCGCCGGAGGCCGCGCTGCTCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAgccg > 5:240904/1‑149 (MQ=255) cgccgGAGGCCGCGCTGCTCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGTAGCGGGTCATGCGCCTTCCACAAGCCGCCGGGaag < 6:237057/149‑1 (MQ=255) cgccgGAGGCCGCGCTGCTCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGGaag > 5:237057/1‑149 (MQ=255) ggAGGCCGCGCTGCTCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCaaggaag < 7:42192/149‑1 (MQ=255) gCCGCGCTGCTCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGag > 6:12786/1‑148 (MQ=255) ccGCGCTGCTCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGagca < 2:290773/149‑1 (MQ=255) cgcgCTGCTCGACACCGTCACGGGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGagcag > 7:53288/1‑149 (MQ=255) gctgctCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGt > 5:278340/1‑149 (MQ=255) ctCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCTCCGGCAaggaagga > 4:229601/1‑138 (MQ=255) ctCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCTCCGGCAaggaagga < 3:229601/138‑1 (MQ=255) ctCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGc > 1:88011/1‑149 (MQ=255) tCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGcc > 7:167078/1‑149 (MQ=255) gACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGa > 6:259841/1‑149 (MQ=255) cACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggctt > 6:278340‑M2/1‑144 (MQ=255) aCGGGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttg > 8:53288‑M2/1‑143 (MQ=255) aCGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttg > 2:88011‑M2/1‑143 (MQ=255) cgcgcgTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCacatcggccaacgctgctccttccttgccggcggcttgt < 8:318271‑M1/149‑40 (MQ=255) gcgcgTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCaagga < 6:174647/120‑1 (MQ=255) gcgcgTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttg < 2:238442‑M2/147‑7 (MQ=255) gcgcgTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttg > 1:238442‑M2/1‑141 (MQ=255) ggCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGcga > 3:277104/1‑149 (MQ=255) gCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGcgac < 8:167078/149‑1 (MQ=255) cTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCacatcggacaacgctgctccttccttgccggcggcttgtg > 2:18656‑M1/1‑99 (MQ=255) cTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCacatcggacaacgctgctccttccttgccggcggcttgtg < 1:18656‑M1/139‑41 (MQ=255) cGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAAc < 6:240904/149‑1 (MQ=255) aGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCt < 4:277104/149‑1 (MQ=255) gATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTc < 5:12786/149‑1 (MQ=255) tGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAg < 2:325840/148‑1 (MQ=255) gTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCg > 5:199384/1‑149 (MQ=255) ccAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTg > 4:637/1‑127 (MQ=255) ccAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTg < 3:637/127‑1 (MQ=255) cgcgAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATc < 5:259841/148‑1 (MQ=255) gcgAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCggg < 2:292574/107‑1 (MQ=255) gtAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAAc > 8:80946/1‑149 (MQ=255) ccGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGgc > 3:284270/1‑149 (MQ=255) aCCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCctc > 6:337371/1‑149 (MQ=255) ccGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCctct > 7:315755/1‑148 (MQ=255) ccGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACAATGACACTGGCCGCctct > 3:282617/1‑148 (MQ=255) cGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTa < 7:20511/149‑1 (MQ=255) tgGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAAc > 6:133801/1‑149 (MQ=255) tgGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCAATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCg > 5:295676/1‑117 (MQ=255) tgGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCAATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCg < 6:295676/117‑1 (MQ=255) aGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACttt < 4:284270/149‑1 (MQ=255) aGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACttt < 7:80946/149‑1 (MQ=255) ggTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCa < 5:337371/149‑1 (MQ=255) gTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGaa < 6:298279/96‑1 (MQ=255) gTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGaa > 5:298279/1‑96 (MQ=255) gcgcCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTg > 6:147650/1‑148 (MQ=255) cTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCAc < 5:133801/147‑1 (MQ=255) cacaAGCCGCCGGCAAGGAAGGAGCAGCGTTGTCCGATGTggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgag < 1:18656‑M2/139‑100 (MQ=255) cacaAGCCGCCGGCAAGGAAGGAGCAGCGTTGTCCGATGTggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgag > 2:18656‑M2/1‑40 (MQ=255) cacaAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCtt < 6:199384/148‑1 (MQ=255) cacaAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTg > 3:50736/1‑149 (MQ=255) acaAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgagccgcacgcgcg < 8:318271‑M2/149‑111 (MQ=255) caAGCCacatcggccaacgctgctccttccttgccggcggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgagccgcacgcgcgt > 2:88011‑M1/1‑6 (MQ=255) caAGCCacatcggccaacgctgctccttccttgccggcggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgagccgcacgcgc < 2:238442‑M1/147‑142 (MQ=255) caAGCCacatcggccaacgctgctccttccttgccggcggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgagccgcacgcgc > 1:238442‑M1/1‑6 (MQ=255) caAGCCacatcggccaacgctgctccttccttgccggcggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgagccgcacgcccgt > 8:53288‑M1/1‑6 (MQ=255) aaGCCacatcggccaacgctgctccttccttgccggcggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgagccgcacgcgcgtg > 6:278340‑M1/1‑5 (MQ=255) gccgccGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCcgc < 8:315755/149‑1 (MQ=255) ccgccgGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTgg > 8:107231/1‑144 (MQ=255) ccgccgGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTgg < 7:107231/144‑1 (MQ=255) | TGGCCGACCGCCGGAGGCCGCGCTGCTCGACACCGTCACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCCGC > NC_002947/2734923‑2735216 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |