New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2735070	42 (0.800)	3 (0.060)	3/242	NT	7.1%	coding (1968/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2735102	39 (0.780)					coding (2000/4422 nt)	PP_2394	leucine‑rich repeat‑containing protein

CACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCCGCGGATGAGGTGCTGCGCGATGCCAGC  >  NC_002947/2734959‑2735241                                                                                                                                                |                                                                                                                                            cACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggctt                                                                                                                                        >  6:278340‑M2/1‑144 (MQ=255)  aCGGGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttg                                                                                                                                       >  8:53288‑M2/1‑143 (MQ=255)  aCGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttg                                                                                                                                       >  2:88011‑M2/1‑143 (MQ=255)    gcgcgTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttg                                                                                                                                       >  1:238442‑M2/1‑141 (MQ=255)    gcgcgTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttg                                                                                                                                       <  2:238442‑M2/147‑7 (MQ=255)            ggCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGcga                                                                                                                             >  3:277104/1‑149 (MQ=255)             gCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGcgac                                                                                                                            <  8:167078/149‑1 (MQ=255)                   cGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAAc                                                                                                                      <  6:240904/149‑1 (MQ=255)                       aGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCt                                                                                                                  <  4:277104/149‑1 (MQ=255)                         gATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTc                                                                                                                <  5:12786/149‑1 (MQ=255)                            tGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAg                                                                                                              <  2:325840/148‑1 (MQ=255)                              gTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCg                                                                                                           >  5:199384/1‑149 (MQ=255)                                           ccAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTg                                                                                                                    <  3:637/127‑1 (MQ=255)                                           ccAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTg                                                                                                                    >  4:637/1‑127 (MQ=255)                                                  cgcgAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATc                                                                                        <  5:259841/148‑1 (MQ=255)                                                   gcgAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCggg                                                                                                                                <  2:292574/107‑1 (MQ=255)                                                              gtAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAAc                                                                           >  8:80946/1‑149 (MQ=255)                                                                  ccGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGgc                                                                       >  3:284270/1‑149 (MQ=255)                                                                        aCCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCctc                                                                 >  6:337371/1‑149 (MQ=255)                                                                          ccGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCctct                                                                >  7:315755/1‑148 (MQ=255)                                                                          ccGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACAATGACACTGGCCGCctct                                                                >  3:282617/1‑148 (MQ=255)                                                                           cGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTa                                                              <  7:20511/149‑1 (MQ=255)                                                                                    tgGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAAc                                                     >  6:133801/1‑149 (MQ=255)                                                                                    tgGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCAATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCg                                                                                     >  5:295676/1‑117 (MQ=255)                                                                                    tgGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCAATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCg                                                                                     <  6:295676/117‑1 (MQ=255)                                                                                       aGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACttt                                                  <  7:80946/149‑1 (MQ=255)                                                                                       aGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACttt                                                  <  4:284270/149‑1 (MQ=255)                                                                                           ggTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCa                                              <  5:337371/149‑1 (MQ=255)                                                                                            gTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGaa                                                                                                  >  5:298279/1‑96 (MQ=255)                                                                                            gTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGaa                                                                                                  <  6:298279/96‑1 (MQ=255)                                                                                                 gcgcCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTg                                         >  6:147650/1‑148 (MQ=255)                                                                                                     cTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCAc                                      <  5:133801/147‑1 (MQ=255)                                                                                                         cacaAGCCGCCGGCAAGGAAGGAGCAGCGTTGTCCGATGTggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgag                                          <  1:18656‑M2/139‑100 (MQ=255)                                                                                                         cacaAGCCGCCGGCAAGGAAGGAGCAGCGTTGTCCGATGTggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgag                                          >  2:18656‑M2/1‑40 (MQ=255)                                                                                                         cacaAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCtt                                 <  6:199384/148‑1 (MQ=255)                                                                                                         cacaAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTg                                >  3:50736/1‑149 (MQ=255)                                                                                                          acaAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTggcttgtggaaggcgcatgacccgctccagcagttgcgggtctgcggttacaccgccctcgcgcaactggttgaccaacgtaccaatcctgccggcgagccgcacgcgcg                               <  8:318271‑M2/149‑111 (MQ=255)                                                                                                              gccgccGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCcgc                           <  8:315755/149‑1 (MQ=255)                                                                                                               ccgccgGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTgg                               <  7:107231/144‑1 (MQ=255)                                                                                                               ccgccgGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTgg                               >  8:107231/1‑144 (MQ=255)                                                                                                                       aaggaaggAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCCGCGGATGAGGt                  >  6:6517/1‑149 (MQ=255)                                                                                                                          gaaggaGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCAc                                      >  7:73848/1‑126 (MQ=255)                                                                                                                          gaaggaGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCAc                                      <  8:73848/126‑1 (MQ=255)                                                                                                                                 cagcGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCCGCGGATGAGGTGCTGCGCGAt        <  5:147650/149‑1 (MQ=255)                                                                                                                                        ggCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCCGCGGATGAGGTGCTGCGCGATGCCAGc  <  4:50736/148‑1 (MQ=255)                                                                                                                                         gCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCCGCGGATGAGGTGCTGCGCGAt        >  6:204254/1‑141 (MQ=255)                                                                                                                                         gCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCCGCGGATGAGGTGCTGCGCGAt        <  5:204254/141‑1 (MQ=255)                                                                                                                                                |                                                                                                                                            CACGCGCGTGCGGCTCGCCGGCAGGATTGGTACGTTGGTCAACCAGTTGCGCGAGGGCGGTGTAACCGCAGACCCGCAACTGCTGGAGCGGGTCATGCGCCTTCCACAAGCCGCCGGCAAGGAAGGAGCAGCGTTGGCCGATGTGGCTTGGGCCGGGCGACGAGAACTGCTTCAGGCGTTGTACGAAGAGCAGAATCCCGACACTGAAACTGGCCGCCTCTTACGACAGAACTTTGCCAGCCTGCACCGCTTGGCCGCGGATGAGGTGCTGCGCGATGCCAGC  >  NC_002947/2734959‑2735241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.