New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2804786 | 51 (0.970) | 4 (0.080) | 4/242 | NT | 9.1% | coding (599/1023 nt) | rbsR | DNA‑binding transcriptional repressor |
? | NC_002947 | = 2804866 | 31 (0.620) | coding (679/1023 nt) | rbsR | DNA‑binding transcriptional repressor |
CGACCTGGTGCGCATTGACCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTT > NC_002947/2804646‑2804933 | cGACCTGGTGCGCATTGACCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATgg > 7:52128/1‑149 (MQ=255) gACCTGGTGCGCATTGACCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATgg > 5:63822/1‑148 (MQ=255) gACCTGGTGCGCATTGACCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATgg < 6:63822/148‑1 (MQ=255) tGGTGCGCATTGACCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCg > 2:100344/1‑147 (MQ=255) gTGCGCATTGACCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGc > 3:237122/1‑149 (MQ=255) gcATTGACCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGt < 4:201676/149‑1 (MQ=255) ttGACCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGctgcatggccacccgggctggt > 6:208412‑M1/1‑127 (MQ=255) aCCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGccc > 2:254068/1‑149 (MQ=255) aCCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGccc < 4:237122/149‑1 (MQ=255) cACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGt > 5:312885/1‑149 (MQ=255) gCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCgg < 6:165759/149‑1 (MQ=255) gggggCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCggg > 7:41782/1‑147 (MQ=255) gggggCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCggg > 2:65085/1‑147 (MQ=255) gggCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATAGCGACGTCGCCTATATCGGCGGCCGCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGGCGAAGCCGGT‑GCGCCCTTGCCGGGCAGc < 4:43494/149‑1 (MQ=255) cGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCgt < 6:312885/149‑1 (MQ=255) gTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGcc < 8:148576/146‑1 (MQ=255) gTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGcc > 7:148576/1‑146 (MQ=255) ccTGGCCACCCGGCATCTGCTGTAGCTTGGCCATCGCGACGTCGCCTATATCCGCGGCCGCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTGCGCCGTGCCATGGCCGAAGCCTGT‑GCGCCCGTGCCGGGCAGCCGTGTac < 7:218489/149‑1 (MQ=255) ccTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCTATGGCCGAAGCCGGT‑GCGCTCGTGCCGGGCAGCCGTGTa < 8:52128/148‑1 (MQ=255) ccTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTa < 8:41782/148‑1 (MQ=255) ggCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTactgc > 7:69813/1‑149 (MQ=255) aCCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGc > 2:200946/1‑127 (MQ=255) aCCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGc < 1:200946/127‑1 (MQ=255) cccGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTactgcactgc < 2:142840/149‑1 (MQ=255) cccGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTactgcactgc < 1:65085/149‑1 (MQ=255) gctgGAGCGTGGCCATCGCGACGGCGCCTATATCGGCGGCCCCGCCGAAACCGGGGGTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGt < 1:312883/114‑1 (MQ=255) gAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGc < 1:254068/147‑1 (MQ=255) aTCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGctgcatggccacccgggctggtgaagtcgcagtgcagtacacggctgcccggcacgggcgcaccggcttcggccat > 6:311693‑M1/1‑73 (MQ=255) cgACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTACCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCa < 1:100344/149‑1 (MQ=255) gACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGc < 4:48594‑M2/149‑2 (MQ=255) gTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGctgcatggccacccgggctggtgaagtcgcagtgcagtacacggctgcccggcacgggcgcaccggcttcggccatggcacggc < 5:208412‑M1/149‑85 (MQ=255) tCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGctgcatggccacccgggctggtgaagtcgcagtgcagtacacggctgcccggcacgggcgcaccggcttcggccatggcacggcg < 5:311693‑M1/149‑86 (MQ=255) gCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAgcggcggc > 4:147295/1‑149 (MQ=255) cTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAgcggcggcg > 4:262440/1‑148 (MQ=255) tatCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAg < 3:262440/148‑1 (MQ=255) atCGGCGGCCCCGCCGAAACCGGGGTTAGCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGgcgc > 1:198702/1‑145 (MQ=255) atCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGgcgc < 2:198702/145‑1 (MQ=255) gcgcgccgAAAGAGGGGTTACTCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGGCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTgg < 8:155246/143‑1 (MQ=255) ccccGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCCCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGAGAACAGCACTCCCACTACACCAGCCCGGGTGCCCAAGCAGCGCCGGCGCACGtccagc > 7:155246/1‑141 (MQ=255) ccgccgAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCgg < 8:67640/114‑1 (MQ=255) ccgccgAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCgg > 7:67640/1‑114 (MQ=255) ccgccgAAACCGGGGTTACCCAGCTGCGCCTGACCGGCTTCCCACGTGCAAAGGCCGAAGCAGGA‑GCGCCCGTGCCGGGCAGCCGTGTACAGCACTGCGACTTAACCAGCCCGCGTGGCCATGCAGCGGCGGCGCACGTGCTGGAAgg > 4:74136/1‑148 (MQ=255) gccgAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGc < 5:320528/53‑1 (MQ=255) gccgAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGc > 6:320528/1‑53 (MQ=255) ggTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCgg < 3:48594/149‑1 (MQ=255) aCCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAg < 6:334924/120‑1 (MQ=255) aCCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAg > 5:334924/1‑120 (MQ=255) ccAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGAttt > 1:329663/1‑149 (MQ=255) ccAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGAttt > 7:310720/1‑149 (MQ=255) aGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGc > 2:32382/1‑132 (MQ=255) aGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATCCAGCGGCGGCGCAGGTGCTGGAAGGCAAGc < 1:32382/132‑1 (MQ=255) cgcCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCg < 3:147295/148‑1 (MQ=255) tGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAAc > 6:318144/1‑149 (MQ=255) gCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGGGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGAc < 8:69813/149‑1 (MQ=255) gCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCAc > 2:292156/1‑70 (MQ=255) gCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCAc < 1:292156/70‑1 (MQ=255) cgccgTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGcggcggaagccgctcaggcgcagctgggtaaccccggtttcggcggggccgccgatataggcga < 5:311693‑M2/149‑65 (MQ=255) gccgTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGcggcggaagccgctcaggcgcagctgggtaaccccggtttcggcggggccgccgatataggcgac < 5:208412‑M2/149‑66 (MQ=255) gctgcatggccacccgggctggtgaagtcgcagtgcagtacacggctgcccggcacgggcgcaccggcttcggccatggcacggcggaagccgctcaggcgcagctgggtaaccccggtttcggcggggccgccgatataggcgacgtc < 4:48594‑M1/149‑149 (MQ=255) | CGACCTGGTGCGCATTGACCACGAGCAGGGGGCGTACCTGGCCACCCGGCATCTGCTGGAGCTTGGCCATCGCGACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGT‑GCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTT > NC_002947/2804646‑2804933 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |