New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2804786	51 (0.970)	4 (0.080)	4/242	NT	9.1%	coding (599/1023 nt)	rbsR	DNA‑binding transcriptional repressor
	?	NC_002947	= 2804866	31 (0.620)					coding (679/1023 nt)	rbsR	DNA‑binding transcriptional repressor

GACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGTCGGTGATCGGCTTCGATGACA  >  NC_002947/2804719‑2805007                                                                                                                                                    |                                                                                                                                              gACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGc                                                                                                                                              <  4:48594‑M2/149‑2 (MQ=255)       gCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAgcggcggc                                                                                                                                        >  4:147295/1‑149 (MQ=255)         cTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAgcggcggcg                                                                                                                                       >  4:262440/1‑148 (MQ=255)            tatCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAg                                                                                                                                    <  3:262440/148‑1 (MQ=255)             atCGGCGGCCCCGCCGAAACCGGGGTTAGCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGgcgc                                                                                                                                      >  1:198702/1‑145 (MQ=255)             atCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGgcgc                                                                                                                                      <  2:198702/145‑1 (MQ=255)                     gcgcgccgAAAGAGGGGTTACTCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGGCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTgg                                                                                                                             <  8:155246/143‑1 (MQ=255)                     ccccGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCCCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGAGAACAGCACTCCCACTACACCAGCCCGGGTGCCCAAGCAGCGCCGGCGCACGtccagc                                                                                                                             >  7:155246/1‑141 (MQ=255)                       ccgccgAAACCGGGGTTACCCAGCTGCGCCTGACCGGCTTCCCACGTGCAAAGGCCGAAGCAGGAGCGCCCGTGCCGGGCAGCCGTGTACAGCACTGCGACTTAACCAGCCCGCGTGGCCATGCAGCGGCGGCGCACGTGCTGGAAgg                                                                                                                         >  4:74136/1‑148 (MQ=255)                                    ggTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCgg                                                                                                           <  3:48594/149‑1 (MQ=255)                                        aCCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAg                                                                                                                                    <  6:334924/120‑1 (MQ=255)                                        aCCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAg                                                                                                                                    >  5:334924/1‑120 (MQ=255)                                          ccAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGAttt                                                                                                     >  1:329663/1‑149 (MQ=255)                                          ccAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGAttt                                                                                                     >  7:310720/1‑149 (MQ=255)                                            aGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGc                                                                                                                    >  2:32382/1‑132 (MQ=255)                                            aGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATCCAGCGGCGGCGCAGGTGCTGGAAGGCAAGc                                                                                                                    <  1:32382/132‑1 (MQ=255)                                                 cgcCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCg                                                                                               <  3:147295/148‑1 (MQ=255)                                                     tGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAAc                                                                                          >  6:318144/1‑149 (MQ=255)                                                        gCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGGGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGAc                                                                                       <  8:69813/149‑1 (MQ=255)                                                                cgccgTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGcggcggaagccgctcaggcgcagctgggtaaccccggtttcggcggggccgccgatataggcga                                                                               <  5:311693‑M2/149‑65 (MQ=255)                                                                 gccgTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGcggcggaagccgctcaggcgcagctgggtaaccccggtttcggcggggccgccgatataggcgac                                                                              <  5:208412‑M2/149‑66 (MQ=255)                                                                     tGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTg                                                                          <  8:310720/149‑1 (MQ=255)                                                                     tGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTg                                                                          <  2:329663/149‑1 (MQ=255)                                                                       ccATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGgt                                                                        <  5:318144/149‑1 (MQ=255)                                                                         aTGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGcggcggaagccgctcaggcgcagctgggtaaccccggtttcggcggggccgccgatataggcgacgtcgcgat                                                                      >  6:311693‑M2/1‑76 (MQ=255)                                                                                        gcgcCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGc                                                       <  2:104541/149‑1 (MQ=255)                                                                                          gcCCGTCCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATCCAGCGGCGGCGCAGGTGCAGGAAg                                                                                                                          >  7:89493/1‑80 (MQ=255)                                                                                            ccGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACg                                                                                         >  6:181580/1‑111 (MQ=255)                                                                                            ccGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGaa                                                   >  3:27123/1‑149 (MQ=255)                                                                                                 ccGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCaa                                              >  8:180388/1‑149 (MQ=255)                                                                                                   gggCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCg                                                                                                                   >  4:102671/1‑78 (MQ=255)                                                                                                   gggCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCg                                                                                                                   <  3:102671/78‑1 (MQ=255)                                                                                                         ccGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGGGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCg                                      >  1:73378/1‑149 (MQ=255)                                                                                                                 tgcactgcGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGc                              >  6:137734/1‑149 (MQ=255)                                                                                                                  gcactgcGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGc                              >  2:93424/1‑148 (MQ=255)                                                                                                                    actgcGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAg                           <  1:93424/149‑1 (MQ=255)                                                                                                                        cGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGt                       >  7:104600/1‑149 (MQ=255)                                                                                                                            ttCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGACGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGTCGGt                   >  2:297349/1‑149 (MQ=255)                                                                                                                               aCCAGCCCGGGTGGCCATGCAGcggcggaagccgctcaggcgcagctgggtaaccccggtttcggcggggccgccgatataggcgacgtcgcgatggccaagctccagcagatgccgggtggccaggtacgccccctgctcgtggtcaa                >  6:208412‑M2/1‑22 (MQ=255)                                                                                                                                     ccGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGTCGGTGATCGGCtt          <  7:180388/149‑1 (MQ=255)                                                                                                                                       gggTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGTCGGTGATCGGCTTc         >  5:200106/1‑148 (MQ=255)                                                                                                                                       gggTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGTCGGTGATCGGCTTCg        <  8:104600/149‑1 (MQ=255)                                                                                                                                        ggTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGTCGGTGATCGGCTTCGa       <  4:27123/149‑1 (MQ=255)                                                                                                                                                 gCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAat                                             >  4:200979/1‑102 (MQ=255)                                                                                                                                                 gCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAat                                             <  3:200979/102‑1 (MQ=255)                                                                                                                                                  gaGCGGCGGCGCAGGTGCTGTAAGGCAAGCGGCCCTCGGTGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGTCGGTGATCGGCTTCGATGACa  <  6:272527/143‑1 (MQ=255)                                                                                                                                                  cAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGTCGGTGATCGGCTTCGATGACa  >  5:272527/1‑144 (MQ=255)                                                                                                                                                    |                                                                                                                                              GACGTCGCCTATATCGGCGGCCCCGCCGAAACCGGGGTTACCCAGCTGCGCCTGAGCGGCTTCCGCCGTGCCATGGCCGAAGCCGGTGCGCCCGTGCCGGGCAGCCGTGTACTGCACTGCGACTTCACCAGCCCGGGTGGCCATGCAGCGGCGGCGCAGGTGCTGGAAGGCAAGCGGCCCTCGGCGATTTTTGCCGGCAACGACATGATCGGCTTTGGTGTGCTGCGCGCTGCAGCCGAACGCAATATCAGCGTACCCGGCGAGCTGTCGGTGATCGGCTTCGATGACA  >  NC_002947/2804719‑2805007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.