New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2856265 =	39 (0.740)	3 (0.060)	3/246	NT	7.4%	coding (90/168 nt)	PP_2508	hypothetical protein
	?	NC_002947	2856332 =	37 (0.720)					coding (157/168 nt)	PP_2508	hypothetical protein

GCAAAAGAAAGGTTGGGCTGCGGAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGC  >  NC_002947/2856122‑2856407                                                                                                                                                |                                                                                                                                               gCAAAAGAAAGGTTGGGCTGCGGAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCAc                                                                                                                                           >  8:146649/1‑149 (MQ=255)  cAAAAGAAAGGTTGGGCTGCGGAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCAcc                                                                                                                                          >  2:12364/1‑149 (MQ=255)   aaaaGAAAGGTTGGGCTGCGGAATCAGGTCGATGAGTAGTTTGTCGTTCTACATGACCCCACCGGTCACCGCCTGGGTTGCCCCAAAGCTTGAGCTTGCTGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCg                                                                                                                                         <  6:333447/149‑1 (MQ=255)      agaaagGTTGGGCTGCGGAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCa                                                                                                                                      <  3:44074/149‑1 (MQ=255)          agGTTGGGCTGCGGAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGaa                                                                                                                                  <  5:129518/149‑1 (MQ=255)                ggCTGCGGAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAAcatca                                                                                                                             <  1:12364/148‑1 (MQ=255)                   tGCGGAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATccc                                                                                                                         >  8:142287/1‑149 (MQ=255)                       gAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGa                                                                                                                                   <  3:339330/135‑1 (MQ=255)                       gAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGa                                                                                                                                   >  4:339330/1‑135 (MQ=255)                         aTCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCt                                                                                                                   <  5:321919/149‑1 (MQ=255)                                  aTCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGc                                                                                                          <  5:80127/149‑1 (MQ=255)                                         gATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATggg                                                                                                    <  7:142287/148‑1 (MQ=255)                                              tCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGtcgt                                                                                              <  7:146649/149‑1 (MQ=255)                                                   gtaggtagtcgcaggccgcgagcacgaccatcacacgcaggaacaagtcttgggcagtcagcgctgaaatcaggatgtttttcatatcaggcaCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGtcgttcgt                                                                                          <  6:135441‑M1/55‑1 (MQ=255)                                                    tACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGtc                                                                                                <  8:223990/141‑1 (MQ=255)                                                    tACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGtc                                                                                                >  7:223990/1‑141 (MQ=255)                                                            cccACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGC‑GGGTAGTGTTCGTACACGGCCTcc                                                                                                                                            >  8:13200/1‑87 (MQ=255)                                                             gcaggccgcgagcacgaccatcacacgcaggaacaagtcttgggcagtcagcgctgaaatcaggatgtttttcatatcaggcaCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGa                                                                                >  3:212537‑M1/84‑148 (MQ=255)                                                                 gccgcgagcacgaccatcacacgcaggaacaagtcttgggcagtcagcgctgaaatcaggatgtttttcatatcaggcaCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGc                                                                           >  5:135441‑M1/80‑149 (MQ=255)                                                                  ggTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGc                                                                           >  4:333006/1‑148 (MQ=255)                                                                  ggTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGc                                                                           <  3:333006/148‑1 (MQ=255)                                                                        cGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGatat                                                                    >  2:330770/1‑149 (MQ=255)                                                                                    cccAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGtcgttc                                                                                            <  5:272093/113‑1 (MQ=255)                                                                                    cccAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCt                                                        >  1:318195/1‑149 (MQ=255)                                                                                    cccAAAGCTTGAGCTTGCGGTCACCGAAGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGtcgttc                                                                                            >  6:272093/1‑113 (MQ=255)                                                                                      cAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGa                                                      >  1:334059/1‑149 (MQ=255)                                                                                            ttgagcttgCGTTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAg                                                <  5:126371/149‑1 (MQ=255)                                                                                            ttgagcttgCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAg                                                                               <  5:273727/118‑1 (MQ=255)                                                                                            ttgagcttgCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAg                                                                               >  6:273727/1‑118 (MQ=255)                                                                                              gagcttgCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAgc                                               <  2:318195/148‑1 (MQ=255)                                                                                              gagcgtgCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAgc                                               <  4:322304/148‑1 (MQ=255)                                                                                                          aCCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGccc                                    >  5:179525/1‑147 (MQ=255)                                                                                                            cGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGa                                >  3:320006/1‑149 (MQ=255)                                                                                                                 aactgctgTGCGGGGTAGTGTTCGTACTCGGCCTCACAGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGt                           >  2:188497/3‑149 (MQ=255)                                                                                                                  tCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAACCAGCCTGCTTTCAGCGCTGCCTGCCCAAGaagtgtg                          >  6:320279/1‑143 (MQ=255)                                                                                                                      ctgTGCGGTGTAGTGTTCGTACTCGGGCTCAGCGGGATGAACATCATCCGCGGGCTCAAGGCTGGCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTGCt                       <  4:320003/148‑1 (MQ=255)                                                                                                                         tgCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCgt                   <  2:334059/149‑1 (MQ=255)                                                                                                                          gCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGATGACTGCCCAAGACTTGTTCCTGCgtg                  >  4:252573/1‑149 (MQ=255)                                                                                                                              ggTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGAt              >  5:130867/1‑149 (MQ=255)                                                                                                                                tAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATgg            <  3:252573/149‑1 (MQ=255)                                                                                                                                   tgtTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGa               >  3:255550/1‑143 (MQ=255)                                                                                                                                   tgtTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGa               <  4:255550/143‑1 (MQ=255)                                                                                                                                          aCTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGaa                                                                 >  6:170459/1‑86 (MQ=255)                                                                                                                                           cTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTcgc  <  6:130867/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                               GCAAAAGAAAGGTTGGGCTGCGGAATCAGGTCGATCAGTAGATTGTCGGTCTACATGACCCCACCGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGC  >  NC_002947/2856122‑2856407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.