New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2856265 =	39 (0.740)	3 (0.060)	3/246	NT	7.4%	coding (90/168 nt)	PP_2508	hypothetical protein
	?	NC_002947	2856332 =	37 (0.720)					coding (157/168 nt)	PP_2508	hypothetical protein

CGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGCCCGGTGGATCAGCCACTGCT  >  NC_002947/2856186‑2856455                                                                                                                                                   |                                                                                                                            gccgcgagcacgaccatcacacgcaggaacaagtcttgggcagtcagcgctgaaatcaggatgtttttcatatcaggcaCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGc                                                                                                                           >  5:135441‑M1/80‑149 (MQ=255)  ggTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGc                                                                                                                           >  4:333006/1‑148 (MQ=255)  ggTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGc                                                                                                                           <  3:333006/148‑1 (MQ=255)        cGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGatat                                                                                                                    >  2:330770/1‑149 (MQ=255)                    cccAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCt                                                                                                        >  1:318195/1‑149 (MQ=255)                      cAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGa                                                                                                      >  1:334059/1‑149 (MQ=255)                            ttgagcttgCGTTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAg                                                                                                <  5:126371/149‑1 (MQ=255)                              gagcttgCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAgc                                                                                               <  2:318195/148‑1 (MQ=255)                              gagcgtgCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAgc                                                                                               <  4:322304/148‑1 (MQ=255)                                          aCCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGccc                                                                                    >  5:179525/1‑147 (MQ=255)                                            cGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGa                                                                                >  3:320006/1‑149 (MQ=255)                                                 aactgctgTGCGGGGTAGTGTTCGTACTCGGCCTCACAGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGt                                                                           >  2:188497/3‑149 (MQ=255)                                                  tCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAACCAGCCTGCTTTCAGCGCTGCCTGCCCAAGaagtgtg                                                                          >  6:320279/1‑143 (MQ=255)                                                      ctgTGCGGTGTAGTGTTCGTACTCGGGCTCAGCGGGATGAACATCATCCGCGGGCTCAAGGCTGGCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTGCt                                                                       <  4:320003/148‑1 (MQ=255)                                                         tgCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCgt                                                                   <  2:334059/149‑1 (MQ=255)                                                          gCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGATGACTGCCCAAGACTTGTTCCTGCgtg                                                                  >  4:252573/1‑149 (MQ=255)                                                              ggTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGAt                                                              >  5:130867/1‑149 (MQ=255)                                                                tAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATgg                                                            <  3:252573/149‑1 (MQ=255)                                                                   tgtTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGa                                                               <  4:255550/143‑1 (MQ=255)                                                                   tgtTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGa                                                               >  3:255550/1‑143 (MQ=255)                                                                          aCTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGaa                                                                                                                 >  6:170459/1‑86 (MQ=255)                                                                           cTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTcgc                                                  <  6:130867/148‑1 (MQ=255)                                                                             gcacctcgcgccgtgacgaacgacccccatggcagccttgagcgcggggatgatgttcatggcggtgaggTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGc                                               >  5:135441‑M2/71‑149 (MQ=255)                                                                                  tcgcgccgtgacgaacgacccccatggcagccttgagcgcggggatgatgttcatggcggtgaggTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGc                                           >  3:212537‑M2/66‑148 (MQ=255)                                                                                    aCCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGAc                                        >  4:62247/1‑149 (MQ=255)                                                                                      cGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCt                                                     >  6:125659/1‑134 (MQ=255)                                                                                          aTGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCAAAGAATTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGActaccta                                  >  1:283772/1‑149 (MQ=255)                                                                                            acgaacgacccccatggcagccttgagcgcggggatgatgttcatggcggtgaggTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGActacctac                                 <  6:135441‑M2/93‑1 (MQ=255)                                                                                                   atcCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGt                          <  1:330770/148‑1 (MQ=255)                                                                                                    tcCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTcc                        >  4:83552/1‑149 (MQ=255)                                                                                                    tcCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTcc                        >  3:40046/1‑149 (MQ=255)                                                                                                     ccccGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCg                       >  7:276993/1‑149 (MQ=255)                                                                                                        cgcgCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGccc                    <  8:276993/149‑1 (MQ=255)                                                                                                         gcgcTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAg                            <  2:66820/140‑1 (MQ=255)                                                                                                         gcgcTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAg                            >  1:66820/1‑140 (MQ=255)                                                                                                          cgcTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGCCCgg                  <  4:40046/149‑1 (MQ=255)                                                                                                          cgcTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGCCCgg                  <  1:188497/149‑1 (MQ=255)                                                                                                               aaGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGCCCGGTGGAt             >  1:193678/1‑149 (MQ=255)                                                                                                                   cTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGCCCGGTGGATCAGc         <  6:179525/149‑1 (MQ=255)                                                                                                                        aTGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGcc                     >  5:208612/1‑132 (MQ=255)                                                                                                                        aTGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGcc                     <  6:208612/132‑1 (MQ=255)                                                                                                                         tGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGCCCGGTGGATCAGCCActgc   <  2:193678/149‑1 (MQ=255)                                                                                                                           ggggTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGCCCGGTGGATCAGCCActgct  <  3:83552/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                            CGGTCACCGCCTGGCTTGCCCCAAAGCTTGAGCTTGCGGTCACCGATGATCTGCTGTGCGGGGTAGTGTTCGTACTCGGCCTCACCGCCATGAACATCATCCCCGCGCTCAAGGCTGCCATGGGGGTCGTTCGTCACGGCGCGAGGTGCCTGATATGAAAAACATCCTGATTTCAGCGCTGACTGCCCAAGACTTGTTCCTGCGTGTGATGGTCGTGCTCGCGGCCTGCGACTACCTACGCAAGGTCCGCCCGGTGGATCAGCCACTGCT  >  NC_002947/2856186‑2856455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.