New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3035075 =	31 (0.590)	4 (0.080)	4/246	NT	10.3%	coding (114/1227 nt)	PP_2647	MFS transporter
	?	NC_002947	3035106 =	40 (0.780)					coding (83/1227 nt)	PP_2647	MFS transporter

GGTCCAGCGCGCCGACGCCTACGGAAATCAACGGGGCGGCTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAG  >  NC_002947/3034927‑3035220                                                                                                                                                     |                                                                                                                                                  aatcccctgcaaatccccccgctcctgcgcctgctacaggcgagatccctcatggaacctaacccatgccaagcaacagccaggcccctcgcggccttcccgaacacagccaacaaagcgtgacccagcaatggctggcaatcctctcg                                                                                                                                                   >  6:346638‑M1/149‑149 (MQ=255)         gcgcCGACGCCTACGGAAATCAACGGGGCGGCTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAg                                                                                                                                           <  6:283619/149‑1 (MQ=255)            ccGACGCCTACGGAAATCAACGGGGCGGCTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGc                                                                                                                                        <  5:75964/149‑1 (MQ=255)                 gCCTACGGAAATCAACGGGGCGGCTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCCCGTCGTTGGGTACCCCCCCCGGGAGGAATGCTCTGGTGCCCCGGGCGAAAg                                                                                                                                   >  4:29170/1‑149 (MQ=255)                                   ggcggcTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCga                                                                                                                   >  3:205380/1‑147 (MQ=255)                                     caggcgagatccctcatggaacctaacccatgccaagcaacagccaggcccctcgcggccttcccgaacacagccaacaaagcgtgacccagcaatggctggcaatcctctcGGTGACCAGGGCGAAAGCGCCCACGGCCACCGagag                                                                                                                <  5:281126‑M1/36‑1 (MQ=255)                                       gcTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGAt                                                                                                             >  3:232713/1‑149 (MQ=255)                                            gatccctcatggaacctaacccatgccaagcaacagccaggcccctcgcggccttcccgaacacagccaacaaagcgtgacccagcaatggctggcaatcctctcGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTgcca                                                                                                        >  6:281126‑M1/106‑149 (MQ=255)                                                    tgatgCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGc                                                                                                <  4:39451/149‑1 (MQ=255)                                                               aGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCt                                                                                     <  4:205380/149‑1 (MQ=255)                                                                 ggTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCttt                                                                                   <  3:29170/149‑1 (MQ=255)                                                                     aCCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTttgtt                                                                                <  5:261166/148‑1 (MQ=255)                                                                      ccATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTgg                                                                              >  4:16093/1‑149 (MQ=255)                                                                       cATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGa                                                                                                              >  8:51524/1‑116 (MQ=255)                                                                       cATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGa                                                                                                              <  7:51524/116‑1 (MQ=255)                                                                            ggCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTgtgt                                                                        >  5:317791/1‑149 (MQ=255)                                                                            acagccaggcccctcgcggccttcccgaacacagccaacaaagcgtgacccagcaatggctggcaatcctctcGGTGACCAGGGCGAAAGCGCCCACGGCCAc                                                                                                                      <  8:173825‑M1/30‑1 (MQ=255)                                                                            acagccaggcccctcgcggccttcccgaacacagccaacaaagcgtgacccagcaatggctggcaatcctctcGGTGACCAGGGCGAAAGCGCCCACGGCCAc                                                                                                                      >  7:173825‑M1/74‑103 (MQ=255)                                                                                ggCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCgg                                                                    <  3:16093/149‑1 (MQ=255)                                                                                     ggCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAgg                                                               <  7:150741/149‑1 (MQ=255)                                                                                        cTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCcg                                                            >  1:255988/1‑149 (MQ=255)                                                                                              tGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAggg                                                      >  7:107521/1‑149 (MQ=255)                                                                                              tGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAggg                                                      >  3:283393/1‑149 (MQ=255)                                                                                                    ccAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTgg                                                >  2:223744/1‑149 (MQ=255)                                                                                                      aGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCt                                              <  8:107521/149‑1 (MQ=255)                                                                                                            cTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCt                                        >  8:109838/1‑149 (MQ=255)                                                                                                                 cacaTCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCa                                   >  4:107716/1‑149 (MQ=255)                                                                                                                    aTCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATgg                                <  6:317791/149‑1 (MQ=255)                                                                                                                               cacccACAGGGAGGAATTAACTGGTGACCAGGGCGAAAGCGCCAACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCAGTTGCTTGGCATGGGTTAGGTTCCa                     >  2:112570/3‑149 (MQ=255)                                                                                                                                ccccACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTgg                                                                                             >  8:45024/1‑76 (MQ=255)                                                                                                                                 cccACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCAt                    >  3:338977/1‑148 (MQ=255)                                                                                                                                 cccACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGCGTTAGGTTCCAt                    >  6:237133/1‑148 (MQ=255)                                                                                                                                   cACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAg                 <  4:338977/149‑1 (MQ=255)                                                                                                                                      cGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTttgt                                                                                 <  6:200217/82‑1 (MQ=255)                                                                                                                                        ggaggaATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAg                           >  7:227805/1‑134 (MQ=255)                                                                                                                                        ggaggaATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAg                           <  8:227805/134‑1 (MQ=255)                                                                                                                                                 cACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGt    <  7:109838/148‑1 (MQ=255)                                                                                                                                                  aCTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTACCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAg  >  4:307608/1‑149 (MQ=255)                                                                                                                                                    tGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAg  >  1:174564/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GGTCCAGCGCGCCGACGCCTACGGAAATCAACGGGGCGGCTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAG  >  NC_002947/3034927‑3035220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.