New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3035075 =	31 (0.590)	4 (0.080)	4/246	NT	10.3%	coding (114/1227 nt)	PP_2647	MFS transporter
	?	NC_002947	3035106 =	40 (0.780)					coding (83/1227 nt)	PP_2647	MFS transporter

GGCGGCTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAGCGGGGGGATTTGCAGGGGATTG  >  NC_002947/3034961‑3035254                                                                                                                                                  |                                                                                                                                                     ggcggcTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCga                                                                                                                                                     >  3:205380/1‑147 (MQ=255)   caggcgagatccctcatggaacctaacccatgccaagcaacagccaggcccctcgcggccttcccgaacacagccaacaaagcgtgacccagcaatggctggcaatcctctcGGTGACCAGGGCGAAAGCGCCCACGGCCACCGagag                                                                                                                                                  <  5:281126‑M1/36‑1 (MQ=255)     gcTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGAt                                                                                                                                               >  3:232713/1‑149 (MQ=255)          gatccctcatggaacctaacccatgccaagcaacagccaggcccctcgcggccttcccgaacacagccaacaaagcgtgacccagcaatggctggcaatcctctcGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTgcca                                                                                                                                          >  6:281126‑M1/106‑149 (MQ=255)                  tgatgCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGc                                                                                                                                  <  4:39451/149‑1 (MQ=255)                             aGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCt                                                                                                                       <  4:205380/149‑1 (MQ=255)                               ggTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCttt                                                                                                                     <  3:29170/149‑1 (MQ=255)                                   aCCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTttgtt                                                                                                                  <  5:261166/148‑1 (MQ=255)                                    ccATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTgg                                                                                                                >  4:16093/1‑149 (MQ=255)                                     cATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGa                                                                                                                                                >  8:51524/1‑116 (MQ=255)                                     cATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGa                                                                                                                                                <  7:51524/116‑1 (MQ=255)                                          ggCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTgtgt                                                                                                          >  5:317791/1‑149 (MQ=255)                                              ggCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCgg                                                                                                      <  3:16093/149‑1 (MQ=255)                                                   ggCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAgg                                                                                                 <  7:150741/149‑1 (MQ=255)                                                      cTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCcg                                                                                              >  1:255988/1‑149 (MQ=255)                                                            tGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAggg                                                                                        >  3:283393/1‑149 (MQ=255)                                                            tGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAggg                                                                                        >  7:107521/1‑149 (MQ=255)                                                                  ccAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTgg                                                                                  >  2:223744/1‑149 (MQ=255)                                                                    aGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCt                                                                                <  8:107521/149‑1 (MQ=255)                                                                          cTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCt                                                                          >  8:109838/1‑149 (MQ=255)                                                                               cacaTCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCa                                                                     >  4:107716/1‑149 (MQ=255)                                                                                  aTCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATgg                                                                  <  6:317791/149‑1 (MQ=255)                                                                                             cacccACAGGGAGGAATTAACTGGTGACCAGGGCGAAAGCGCCAACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCAGTTGCTTGGCATGGGTTAGGTTCCa                                                       >  2:112570/3‑149 (MQ=255)                                                                                              ccccACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTgg                                                                                                                               >  8:45024/1‑76 (MQ=255)                                                                                               cccACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCAt                                                      >  3:338977/1‑148 (MQ=255)                                                                                               cccACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGCGTTAGGTTCCAt                                                      >  6:237133/1‑148 (MQ=255)                                                                                                 cACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAg                                                   <  4:338977/149‑1 (MQ=255)                                                                                                    cGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTttgt                                                                                                                   <  6:200217/82‑1 (MQ=255)                                                                                                      tggcaatcctctcggtggccgtgggcgctttcgccctggtcaccGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGAtc                                              >  6:281126‑M2/45‑149 (MQ=255)                                                                                                      ggaggaATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAg                                                             >  7:227805/1‑134 (MQ=255)                                                                                                      ggaggaATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAg                                                             <  8:227805/134‑1 (MQ=255)                                                                                                              ctctcggtggccgtgggcgctttcgccctggtcaccGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTg                                       <  5:281126‑M2/112‑1 (MQ=255)                                                                                                               cACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGt                                      <  7:109838/148‑1 (MQ=255)                                                                                                                aCTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTACCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAg                                    >  4:307608/1‑149 (MQ=255)                                                                                                                  tGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAg                                    >  1:174564/1‑147 (MQ=255)                                                                                                                    gtggccgtgggcgctttcgccctggtcaccGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGt                                                                              >  7:173825‑M2/31‑103 (MQ=255)                                                                                                                    gtggccgtgggcgctttcgccctggtcaccGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGt                                                                              <  8:173825‑M2/73‑1 (MQ=255)                                                                                                                    GTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTACCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAg                                 >  3:307608‑M1/1‑148 (MQ=255)                                                                                                                        ccAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCa                            <  5:213944/149‑1 (MQ=255)                                                                                                                         cAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAg                           >  3:71226/1‑149 (MQ=255)                                                                                                                          aGGGCGAAAGCGCACACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGc                                          >  7:234773/1‑133 (MQ=255)                                                                                                                            ggCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAg                        <  4:71226/149‑1 (MQ=255)                                                                                                                             gCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAGc                       >  8:185573/1‑149 (MQ=255)                                                                                                                             gCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGAGCTCGCCTGTAGCAGGCGCAGGAGc                       >  8:180362/1‑149 (MQ=255)                                                                                                                               gAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAGCgg                     <  4:232713/149‑1 (MQ=255)                                                                                                                                       ccACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGGGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAGCGGGGGGAttt             >  6:293806/1‑149 (MQ=255)                                                                                                                                        cACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCAt                                                      <  1:182354/107‑1 (MQ=255)                                                                                                                                        cACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCAt                                                      >  2:182354/1‑107 (MQ=255)                                                                                                                                          cGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAGCGGGGGGATTTGCa          <  4:283393/149‑1 (MQ=255)                                                                                                                                             ccACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAGCGGGGGGATTTGCAggg       <  3:107716/149‑1 (MQ=255)                                                                                                                                                 cGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAGCGGGGGGATTTGCAGGGGAtt   >  6:346638‑M2/2‑149 (MQ=255)                                                                                                                                                  gagaGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAGCGGGGGGATTTGCAGGGGATTg  <  5:237133/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GGCGGCTAACGCAGCCATGATGCCGGGAAGGGTCACCATCAGGCCGGCAAGGCCTGCACTGATGCCCAGGTCGCTGGCCACATCGTTGAGTACCCCCACCGGGAGGAATTCACTGGTGACCAGGGCGAAAGCGCCCACGGCCACCGAGAGGATTGCCAGCCATTGCTGGGTCACGCTTTGTTGGCTGTGTTCGGGAAGGCCGCGAGGGGCCTGGCTGTTGCTTGGCATGGGTTAGGTTCCATGAGGGATCTCGCCTGTAGCAGGCGCAGGAGCGGGGGGATTTGCAGGGGATTG  >  NC_002947/3034961‑3035254

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.