New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3126578 =	38 (0.720)	3 (0.060)	3/238	NT	8.0%	coding (847/960 nt)	PP_2744	ribose‑phosphate pyrophosphokinase family protein
	?	NC_002947	3126653 =	33 (0.670)					coding (772/960 nt)	PP_2744	ribose‑phosphate pyrophosphokinase family protein

GACACTCCGCCGGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCT  >  NC_002947/3126435‑3126722                                                                                                                                                |                                                                                                                                                 ggcaggcctgagcggcgaacacctggtcggtaacgtggcaggcagcaccgtcatcgtattcgacgacctgatcagcacggggcagacgctgctacgcgctgcccaggcctgccggcaggccggagccagccgcatgctggccgCGGcca                                                                                                                                             >  5:53983‑M1/144‑149 (MQ=255)    acTCCGCCGGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGccacca                                                                                                                                          >  7:48806/1‑149 (MQ=255)      tCCGCCGGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGccacca                                                                                                                                          >  3:160450/1‑147 (MQ=255)      tCCGCCGGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGccacca                                                                                                                                          <  4:165718/147‑1 (MQ=255)      tCCGCCGGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGccacca                                                                                                                                          <  4:160450/147‑1 (MQ=255)      tCCGCCGGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAgc                                                                                                                                        >  3:165718/1‑148 (MQ=255)      tCCGCCGGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAg                                                                                                                                         >  5:184536/1‑148 (MQ=255)          ccgGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGTTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTAccc                                                                                                                                    >  2:141937/1‑149 (MQ=255)          ccgGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTAccc                                                                                                                                    <  5:208832/149‑1 (MQ=255)            ggCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGt                                                                                                                                  <  8:48806/149‑1 (MQ=255)                            gggTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGt                                                                                                                  >  1:89723/1‑149 (MQ=255)                                      ccAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGt                                                                                                                                        >  7:130720/1‑117 (MQ=255)                                      ccAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGt                                                                                                                                        <  8:130720/117‑1 (MQ=255)                                       cAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCg                                                                                                       >  4:204794/1‑149 (MQ=255)                                             ccGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCg                                                                                                 >  4:218875/1‑149 (MQ=255)                                               gAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCggt                                                                                               >  6:168948/1‑149 (MQ=255)                                                   ggTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGgtggtg                                                                                           <  6:56231/149‑1 (MQ=255)                                                     ttGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGaa                                                                                         >  7:301607/1‑149 (MQ=255)                                                           agcagcTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGcc                                                                                   <  2:89723/149‑1 (MQ=255)                                                                cTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCGCAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCgtggg                                                                              <  8:1201/149‑1 (MQ=255)                                                                cTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCGCAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCgtggg                                                                              >  7:1201/1‑149 (MQ=255)                                                                   ggCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCgtgggtg                                                                            <  5:168948/148‑1 (MQ=255)                                                                         cAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCgg                                                                     <  6:184536/149‑1 (MQ=255)                                                                            ggCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCa                                                                  <  3:218875/149‑1 (MQ=255)                                                                                   cagacgctgctacgcgctgcccaggcctgccggcaggccggagccagccgcatgctggccgCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCcgc                                                                       <  8:157792‑M1/76‑1 (MQ=255)                                                                                      tCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCgg                                                          <  5:33043/147‑1 (MQ=255)                                                                                      tCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCgg                                                          >  6:33043/1‑147 (MQ=255)                                                                                        gacgaTATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCggctgg                                                      >  4:221114/1‑149 (MQ=255)                                                                                         acgaTATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCggctggc                                                     >  8:261407/1‑149 (MQ=255)                                                                                           gaTATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTc                                                   >  5:105695/1‑149 (MQ=255)                                                                                             tatCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCcgcg                                                                      >  3:154771/1‑128 (MQ=255)                                                                                             tatCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCcgcg                                                                      <  4:154771/128‑1 (MQ=255)                                                                                                 cgctgcccaggcctgccggcaggccggagccagccgcatgctggccgCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGcc                                                                         >  4:98482‑M1/48‑121 (MQ=255)                                                                                                 cgctgcccaggcctgccggcaggccggagccagccgcatgctggccgCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGcc                                                                         <  3:98482‑M1/74‑1 (MQ=255)                                                                                                       cTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGc                                       <  7:261407/149‑1 (MQ=255)                                                                                                          cAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGCCAg                                     <  3:204794/148‑1 (MQ=255)                                                                                                             gCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCt                                 >  3:80829/1‑149 (MQ=255)                                                                                                                tCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTggg                              <  6:105695/149‑1 (MQ=255)                                                                                                                  gCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCa                            <  3:221114/149‑1 (MQ=255)                                                                                                                              gAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTagcagc                <  8:122973/149‑1 (MQ=255)                                                                                                                              gAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTagc                   >  6:167706/1‑146 (MQ=255)                                                                                                                              gAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTagc                   <  5:167706/146‑1 (MQ=255)                                                                                                                                           gCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCa                                                                  <  7:79021/86‑1 (MQ=255)                                                                                                                                           gCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCa                                                                  >  8:79021/1‑86 (MQ=255)                                                                                                                                             tGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCt  >  4:121988/1‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                 GACACTCCGCCGGCGCCACCTGCGCCGGGGTCATGCGCCAGGGCCCGAACGGTTGGCAAGCAGCTCGGCGACCAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCT  >  NC_002947/3126435‑3126722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.