New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3126578 =	38 (0.720)	3 (0.060)	3/238	NT	8.0%	coding (847/960 nt)	PP_2744	ribose‑phosphate pyrophosphokinase family protein
	?	NC_002947	3126653 =	33 (0.670)					coding (772/960 nt)	PP_2744	ribose‑phosphate pyrophosphokinase family protein

CAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCC  >  NC_002947/3126507‑3126795                                                                                                                                                   |                                                                                                                                               cAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCgg                                                                                                                                              <  6:184536/149‑1 (MQ=255)    ggCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCa                                                                                                                                           <  3:218875/149‑1 (MQ=255)           cagacgctgctacgcgctgcccaggcctgccggcaggccggagccagccgcatgctggccgCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCcgc                                                                                                                                                <  8:157792‑M1/76‑1 (MQ=255)              tCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCgg                                                                                                                                   <  5:33043/147‑1 (MQ=255)              tCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCgg                                                                                                                                   >  6:33043/1‑147 (MQ=255)                gacgaTATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCggctgg                                                                                                                               >  4:221114/1‑149 (MQ=255)                 acgaTATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCggctggc                                                                                                                              >  8:261407/1‑149 (MQ=255)                   gaTATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTc                                                                                                                            >  5:105695/1‑149 (MQ=255)                     tatCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCcgcg                                                                                                                                               <  4:154771/128‑1 (MQ=255)                     tatCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCcgcg                                                                                                                                               >  3:154771/1‑128 (MQ=255)                               cTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGc                                                                                                                <  7:261407/149‑1 (MQ=255)                                  cAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGCCAg                                                                                                              <  3:204794/148‑1 (MQ=255)                                     gCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCt                                                                                                          >  3:80829/1‑149 (MQ=255)                                        tCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTggg                                                                                                       <  6:105695/149‑1 (MQ=255)                                          gCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCa                                                                                                     <  3:221114/149‑1 (MQ=255)                                                      gAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTagcagc                                                                                         <  8:122973/149‑1 (MQ=255)                                                      gAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTagc                                                                                            <  5:167706/146‑1 (MQ=255)                                                      gAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTagc                                                                                            >  6:167706/1‑146 (MQ=255)                                                                   gCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCa                                                                                                                                           >  8:79021/1‑86 (MQ=255)                                                                   gCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCa                                                                                                                                           <  7:79021/86‑1 (MQ=255)                                                                     tGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCt                                                                           >  4:121988/1‑148 (MQ=255)                                                                       gcggccacccacggcctgttcaccaccggtggcgagctgttcgacagcggcgcgttcgaacgggtactggtggccgCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTg                                                                                    <  8:157792‑M2/61‑1 (MQ=255)                                                                         ggccacccacggcctgttcaccaccggtggcgagctgttcgacagcggcgcgttcgaacgggtactggtggccgCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAgcg                                                                                                  <  3:98482‑M2/47‑1 (MQ=255)                                                                         ggccacccacggcctgttcaccaccggtggcgagctgttcgacagcggcgcgttcgaacgggtactggtggccgCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAgcg                                                                                                  >  4:98482‑M2/75‑121 (MQ=255)                                                                          GCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAg                                                                     >  3:121988‑M1/1‑149 (MQ=255)                                                                             ACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGc                                                                                                            <  6:327016‑M1/107‑1 (MQ=255)                                                                             ACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGc                                                                                                            >  5:327016‑M1/1‑107 (MQ=255)                                                                                aGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGgtcgtc                                                               <  8:301607/149‑1 (MQ=255)                                                                                      cGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATAc                                                         <  1:141937/149‑1 (MQ=255)                                                                                       gTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATAc                                                         >  1:61975/1‑148 (MQ=255)                                                                                       gTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATAc                                                         >  6:180612/1‑148 (MQ=255)                                                                                       gTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATAc                                                         >  6:113556/1‑148 (MQ=255)                                                                                       gTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATAc                                                         >  2:332551/1‑148 (MQ=255)                                                                                                     cTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACg                                                  <  6:283945/141‑1 (MQ=255)                                                                                                     cTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACg                                                  >  5:283945/1‑141 (MQ=255)                                                                                                           aaCAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCAc                                    >  4:184636/1‑149 (MQ=255)                                                                                                            aCAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACg                                   >  8:56257/1‑149 (MQ=255)                                                                                                                cTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTAc                               >  6:5969/1‑149 (MQ=255)                                                                                                                cTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTAc                               >  4:74580/1‑149 (MQ=255)                                                                                                                 tCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGACGACGGTGCTGCCTGCCACGTTAcc                              >  7:118030/1‑149 (MQ=255)                                                                                                                   gCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGa                            >  8:84628/1‑149 (MQ=255)                                                                                                                       ccGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAg                        <  3:184636/149‑1 (MQ=255)                                                                                                                              tgAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTcg                 >  2:180729/1‑149 (MQ=255)                                                                                                                                             tggccgCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGgcctgcc  >  5:53983‑M2/7‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                               CAGGGCGCTGGTATCGACGATATCCAGTTGCTCCAGGCATCGCACAGGCAGGCGAAAGGGGGCGATGCTGTCGGCCACCAGTACCCGTTCGAACGCGCCGCTGTCGAACAGCTCGCCACCGGTGGTGAACAGGCCGTGGGTGGCCGCGGCCAGCATGCGGCTGGCTCCGGCCTGCCGGCAGGCCTGGGCAGCGCGTAGCAGCGTCTGCCCCGTGCTGATCAGGTCGTCGAATACGATGACGGTGCTGCCTGCCACGTTACCGACCAGGTGTTCGCCGCTCAGGCCTGCC  >  NC_002947/3126507‑3126795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.