New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3371988 =	51 (0.970)	3 (0.060)	3/246	NT	5.9%	coding (85/288 nt)	csoR	copper utilization transcriptional regulator
	?	NC_002947	3372008 =	47 (0.920)					coding (65/288 nt)	csoR	copper utilization transcriptional regulator

GTGCTTCGACGGTGTGTTCCAGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTC  >  NC_002947/3371844‑3372135                                                                                                                                                 |                                                                                                                                                     aaggggtagttggtttgaccatatcccccccagggggataggatgcgagcgtaattcatcgatgcatgagactcaaggcatgagcgatcacgaacacggccatcagcaccaaagtcatagcgatatcatcaaaaggttgaagcgTgcg                                                                                                                                                   <  6:143486‑M1/4‑1 (MQ=255)  tGCTTCGACGGTGTGTTCCAGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCa                                                                                                                                                 <  8:70967/149‑1 (MQ=255)     ttCGACGGTGTGTTCCAGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGt                                                                                                                                              >  7:294082/1‑149 (MQ=255)      tCGACGGTGTGTTCCAGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGt                                                                                                                                              <  8:240679/148‑1 (MQ=255)        gACGGTGTGTTCCAGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTgcgc                                                                                                                                                  <  4:21976/142‑1 (MQ=255)        gACGGTGTGTTCCAGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTgcgc                                                                                                                                                  >  3:21976/1‑142 (MQ=255)                gtTCCAGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCa                                                                                                                                   >  1:128612/1‑149 (MQ=255)                     aGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTg                                                                                                                                             >  4:13330/1‑134 (MQ=255)                     aGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTg                                                                                                                                             <  3:13330/134‑1 (MQ=255)                     aGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCtt                                                                                                                              >  2:33801/1‑149 (MQ=255)                             aTCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCttt                                                                                                                     <  4:122672/149‑1 (MQ=255)                                gATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCtt                                                                                                                      >  4:20954/1‑145 (MQ=255)                                gATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCtt                                                                                                                      <  3:20954/145‑1 (MQ=255)                                  tatGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGc                                                                                                                                    <  5:328527/130‑1 (MQ=255)                                  tatGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGc                                                                                                                                    >  6:328527/1‑130 (MQ=255)                                            gATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCaa                                                                                                                           <  8:245551/129‑1 (MQ=255)                                            gATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCaa                                                                                                                           >  7:245551/1‑129 (MQ=255)                                               aaGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGa                                                                                                    <  2:128612/148‑1 (MQ=255)                                                   acacGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAACCCTTTTGATGATATCGCTATGACttt                                                                                                <  1:4167/149‑1 (MQ=255)                                                   acacGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTtg                                                                                                                   >  2:263664/1‑129 (MQ=255)                                                   acacGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTtg                                                                                                                   <  1:263664/129‑1 (MQ=255)                                                      cGCTTGGCCTGGCAGACGTCTTTTTCCACGGCATGCAGTTCCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTg                                                                                            <  7:108447/149‑1 (MQ=255)                                                            gCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATg                                                                                      >  7:170354/1‑149 (MQ=255)                                                                ggCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCg                                                                                  >  1:83085/1‑149 (MQ=255)                                                                   aGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCttt                                                                                                                     <  8:290479/111‑1 (MQ=255)                                                                   aGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCgtgt                                                                               >  3:128091/1‑149 (MQ=255)                                                                   aGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCgtgt                                                                               >  4:256524/1‑149 (MQ=255)                                                                     aCGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGc                                                                                           <  1:183883/135‑1 (MQ=255)                                                                     aCGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGc                                                                                           <  1:189462/135‑1 (MQ=255)                                                                     aCGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGc                                                                                           >  2:189462/1‑135 (MQ=255)                                                                     aCGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGc                                                                                           >  2:183883/1‑135 (MQ=255)                                                                          tttttCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGAt                                                                        >  8:206707/1‑149 (MQ=255)                                                                                      aTGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCtt                                                            <  8:170354/149‑1 (MQ=255)                                                                                          aGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGt                                                        >  6:236938/1‑149 (MQ=255)                                                                                               cTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCAt                                                   <  4:128091/149‑1 (MQ=255)                                                                                               cTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCAt                                                   <  2:83085/149‑1 (MQ=255)                                                                                                 gAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATg                                                  >  1:246763/1‑148 (MQ=255)                                                                                                     gATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCg                                             <  3:256524/149‑1 (MQ=255)                                                                                                           gACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAAt                                       >  5:3627/1‑149 (MQ=255)                                                                                                                    ccGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCg                               >  8:313349/1‑148 (MQ=255)                                                                                                                           tCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTAt                       >  2:176538/1‑149 (MQ=255)                                                                                                                             ttCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCATATca                     >  3:90667/1‑148 (MQ=255)                                                                                                                               catcaaaaggttgaagcgTGCGGAGGGCCACCTGCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATcccc                   <  2:12433‑M1/131‑1 (MQ=255)                                                                                                                               cGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATc                      <  1:33801/146‑1 (MQ=255)                                                                                                                                gATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATccccc                  >  8:164943/1‑149 (MQ=255)                                                                                                                                    aaaggttgaagcgTGCGGAGGGCCACCTGCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGa                                                          >  6:115741‑M1/14‑105 (MQ=255)                                                                                                                                    aaaggttgaagcgTGCGGAGGGCCACCTGCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGa                                                          <  5:115741‑M1/92‑1 (MQ=255)                                                                                                                                     tGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTgggg             <  6:3627/149‑1 (MQ=255)                                                                                                                                     tGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTgggg             <  7:164943/149‑1 (MQ=255)                                                                                                                                       cTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCa                                                    >  6:51008/1‑108 (MQ=255)                                                                                                                                       cTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCa                                                    <  5:51008/108‑1 (MQ=255)                                                                                                                                        tGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTgggggg           >  4:191844/1‑148 (MQ=255)                                                                                                                                         gACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTggggggg          >  6:24455/1‑148 (MQ=255)                                                                                                                                         gACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTggggggg          <  5:24455/148‑1 (MQ=255)                                                                                                                                         gACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGa         <  7:313349/149‑1 (MQ=255)                                                                                                                                         gACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGa         >  2:97991/1‑149 (MQ=255)                                                                                                                                           cGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCCCAGGGGGata       <  5:236938/149‑1 (MQ=255)                                                                                                                                                ctgcGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTc  <  1:97991/149‑1 (MQ=255)                                                                                                                                                 TGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTc  <  4:302373‑M1/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GTGCTTCGACGGTGTGTTCCAGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTC  >  NC_002947/3371844‑3372135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.