New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3371988 =	51 (0.970)	3 (0.060)	3/246	NT	5.9%	coding (85/288 nt)	csoR	copper utilization transcriptional regulator
	?	NC_002947	3372008 =	47 (0.920)					coding (65/288 nt)	csoR	copper utilization transcriptional regulator

AGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCAAACCAACTACCCCTT  >  NC_002947/3371864‑3372151                                                                                                                                                 |                                                                                                                                                 aGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCtt                                                                                                                                              >  2:33801/1‑149 (MQ=255)         aTCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCttt                                                                                                                                     <  4:122672/149‑1 (MQ=255)            gATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCtt                                                                                                                                      >  4:20954/1‑145 (MQ=255)            gATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCtt                                                                                                                                      <  3:20954/145‑1 (MQ=255)              ggggataggatgcgagcgtaattcatcgatgcatgagactcaaggcatgagcgatcacgaacacggccatcagcaccaaagtcatagcgatatcatcaaaaggttgaagcgtgcgcaggtggccctccgcaCGCTTCAA‑CCTTTtgatg                                                                                                                                <  2:12433‑M2/18‑1 (MQ=255)                        gATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCaa                                                                                                                                           <  8:245551/129‑1 (MQ=255)                        gATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCaa                                                                                                                                           >  7:245551/1‑129 (MQ=255)                           aaGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGa                                                                                                                    <  2:128612/148‑1 (MQ=255)                               acacGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAACCCTTTTGATGATATCGCTATGACttt                                                                                                                <  1:4167/149‑1 (MQ=255)                               acacGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTtg                                                                                                                                   <  1:263664/129‑1 (MQ=255)                               acacGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTtg                                                                                                                                   >  2:263664/1‑129 (MQ=255)                                  cGCTTGGCCTGGCAGACGTCTTTTTCCACGGCATGCAGTTCCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTg                                                                                                            <  7:108447/149‑1 (MQ=255)                                        gCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATg                                                                                                      >  7:170354/1‑149 (MQ=255)                                            ggCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCg                                                                                                  >  1:83085/1‑149 (MQ=255)                                               aGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCttt                                                                                                                                     <  8:290479/111‑1 (MQ=255)                                               aGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCgtgt                                                                                               >  3:128091/1‑149 (MQ=255)                                               aGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCgtgt                                                                                               >  4:256524/1‑149 (MQ=255)                                                 aCGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGc                                                                                                           <  1:183883/135‑1 (MQ=255)                                                 aCGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGc                                                                                                           <  1:189462/135‑1 (MQ=255)                                                 aCGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGc                                                                                                           >  2:189462/1‑135 (MQ=255)                                                 aCGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGc                                                                                                           >  2:183883/1‑135 (MQ=255)                                                     tcaaggcatgagcgatcacgaacacggccatcagcaccaaagtcatagcgatatcatcaaaaggttgaagcgtgcgcaggtggccctccgcaCGCTTCAA‑CCttt                                                                                                                                     >  6:115741‑M2/93‑105 (MQ=255)                                                     tcaaggcatgagcgatcacgaacacggccatcagcaccaaagtcatagcgatatcatcaaaaggttgaagcgtgcgcaggtggccctccgcaCGCTTCAA‑CCttt                                                                                                                                     <  5:115741‑M2/13‑1 (MQ=255)                                                      tttttCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGAt                                                                                        >  8:206707/1‑149 (MQ=255)                                                                  aTGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCtt                                                                            <  8:170354/149‑1 (MQ=255)                                                                      aGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGt                                                                        >  6:236938/1‑149 (MQ=255)                                                                           cTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCAt                                                                   <  4:128091/149‑1 (MQ=255)                                                                           cTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCAt                                                                   <  2:83085/149‑1 (MQ=255)                                                                             gAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATg                                                                  >  1:246763/1‑148 (MQ=255)                                                                                 gATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCg                                                             <  3:256524/149‑1 (MQ=255)                                                                                       gACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAAt                                                       >  5:3627/1‑149 (MQ=255)                                                                                                ccGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCg                                               >  8:313349/1‑148 (MQ=255)                                                                                                       tCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTAt                                       >  2:176538/1‑149 (MQ=255)                                                                                                         ttCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCATATca                                     >  3:90667/1‑148 (MQ=255)                                                                                                           catcaaaaggttgaagcgTGCGGAGGGCCACCTGCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATcccc                                   <  2:12433‑M1/131‑1 (MQ=255)                                                                                                           cGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATc                                      <  1:33801/146‑1 (MQ=255)                                                                                                            gATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATccccc                                  >  8:164943/1‑149 (MQ=255)                                                                                                                aaaggttgaagcgTGCGGAGGGCCACCTGCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGa                                                                          <  5:115741‑M1/92‑1 (MQ=255)                                                                                                                aaaggttgaagcgTGCGGAGGGCCACCTGCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGa                                                                          >  6:115741‑M1/14‑105 (MQ=255)                                                                                                                 tGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTgggg                             <  7:164943/149‑1 (MQ=255)                                                                                                                 tGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTgggg                             <  6:3627/149‑1 (MQ=255)                                                                                                                   cTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCa                                                                    >  6:51008/1‑108 (MQ=255)                                                                                                                   cTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCa                                                                    <  5:51008/108‑1 (MQ=255)                                                                                                                    tGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTgggggg                           >  4:191844/1‑148 (MQ=255)                                                                                                                     gACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTggggggg                          <  5:24455/148‑1 (MQ=255)                                                                                                                     gACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTggggggg                          >  6:24455/1‑148 (MQ=255)                                                                                                                     gACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGa                         <  7:313349/149‑1 (MQ=255)                                                                                                                     gACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGa                         >  2:97991/1‑149 (MQ=255)                                                                                                                       cGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCCCAGGGGGata                       <  5:236938/149‑1 (MQ=255)                                                                                                                            ctgcGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTc                  <  1:97991/149‑1 (MQ=255)                                                                                                                             TGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTc                  <  4:302373‑M1/148‑1 (MQ=255)                                                                                                                               CGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCaaa               <  4:288763‑M1/149‑1 (MQ=255)                                                                                                                                GCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCAAAc              >  1:176538‑M1/1‑149 (MQ=255)                                                                                                                                   ggTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCAAACCa            >  2:250890/1‑148 (MQ=255)                                                                                                                                    gTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCAAACCAAc          <  3:302373/149‑1 (MQ=255)                                                                                                                                    gTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCAAACCAAc          <  3:288763/149‑1 (MQ=255)                                                                                                                                       gCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCAAACCAACTAc       <  4:90667/149‑1 (MQ=255)                                                                                                                                         ccTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCAAACCAACTAccc     >  5:143486/1‑149 (MQ=255)                                                                                                                                             cgcaCGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCAAACCAACTACCCCtt  <  6:143486‑M2/144‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                 AGGCAGTGATCGATATGGTCTTGGATAAGCACACGCTTGGCCTGGCAGACGGCTTTTTCCACGGCATGCAGTTGCTGAGCGATGTCGACGCAGGCCCGGCTGTCTTCGATCATGCTGACGATGCTGCGCAGGTGGCCCTCCGCACGCTTCAA‑CCTTTTGATGATATCGCTATGACTTTGGTGCTGATGGCCGTGTTCGTGATCGCTCATGCCTTGAGTCTCATGCATCGATGAATTACGCTCGCATCCTATCCCCCTGGGGGGGATATGGTCAAACCAACTACCCCTT  >  NC_002947/3371864‑3372151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.