New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3796293 =	49 (0.930)	4 (0.080)	4/242	NT	7.6%	coding (161/1884 nt)	fcs	feruloyl‑CoA‑synthetase
	?	NC_002947	3796330 =	50 (0.990)					coding (124/1884 nt)	fcs	feruloyl‑CoA‑synthetase

ACTGAGGCCCAGTCCTAGCAAGTTGGCGGCGATGGTGCGCACATCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGG  >  NC_002947/3796145‑3796440                                                                                                                                                     |                                                                                                                                                     aCTGAGGCCCAGTCCTAGCAAGTTGGCGGCGATGGTGCGCACATCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCt                                                                                                                                                      >  7:20743/1‑149 (MQ=255)  cTGCGGCCCAGTCCTAGCCAGTGTGCGGCGCTGGTGCGCACATCGGCGAGCATCTGCACGTAGCTGATCGAACTCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTc                                                                                                                                                     <  6:274277/149‑1 (MQ=255)       gCCCAGTCCTAGCAAGTTGGCGGCGATGGTGCGCACATCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAg                                                                                                                                                  >  2:9950/1‑147 (MQ=255)               cTAGCAAGTTGGCGGCGATGGTGCGCACATCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGcc                                                                                                                                        >  5:19422/1‑149 (MQ=255)                tAGCAAGTTGGCGGCGATGGTGCGCACATCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCg                                                                                                                                       >  2:336046/1‑149 (MQ=255)                  gCAAGTTGGCGGCGATGGTGCGCACATCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCg                                                                                                                                       <  1:177746/147‑1 (MQ=255)                                 tGGTGCGCACATCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTgg                                                                                                                       <  8:20743/148‑1 (MQ=255)                                         acaTCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAgg                                                                                                              >  6:317549/1‑149 (MQ=255)                                         acaTCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAgg                                                                                                              >  5:168947/1‑149 (MQ=255)                                           aTCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑tt                                                                                                           <  6:19422/149‑1 (MQ=255)                                              ggCGAGCATCTGCACGTAGCTTATCGAACGCCAGGCACCTTCTGCCTGGCGTGCCGCGATGAAAGTGGGGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGc                                                                                                         <  2:328385/148‑1 (MQ=255)                                                 tcgaccgaccctggccaacgtccgcgctaccgccaggtggccatcgggcatccccaggtgcaggtcagtcacgtcgacgacgtgctgcgcatgcaacctgTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAg                                                                                                               >  7:245085‑M1/101‑140 (MQ=255)                                                 tcgaccgaccctggccaacgtccgcgctaccgccaggtggccatcgggcatccccaggtgcaggtcagtcacgtcgacgacgtgctgcgcatgcaacctgTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAg                                                                                                               <  8:245085‑M1/40‑1 (MQ=255)                                                   gCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATgcgc                                                                                                   <  5:317549/149‑1 (MQ=255)                                                       cTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGGgcagca                                                                                               >  2:291982/1‑149 (MQ=255)                                                       cTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCgcagca                                                                                               >  6:105558/1‑149 (MQ=255)                                                        tGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCAc                                                                                              >  4:180197/1‑149 (MQ=255)                                                          cACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCgcagca                                                                                               <  5:105558/146‑1 (MQ=255)                                                             gTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCAcgtcgt                                                                                         <  1:9950/149‑1 (MQ=255)                                                              tAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACgtcgtc                                                                                        >  2:39877/1‑149 (MQ=255)                                                                gCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGa                                                                                      <  3:180197/149‑1 (MQ=255)                                                                 cTGATCGAACGCCAGGCACCGTGTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGAc                                                                                     >  7:53266/1‑149 (MQ=255)                                                                 cTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGAc                                                                                     <  1:336046/149‑1 (MQ=255)                                                                    aTCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGt                                                                                   >  1:138489/1‑148 (MQ=255)                                                                           gCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGAc                                                                                                                 <  6:152682/112‑1 (MQ=255)                                                                           gCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGAcc                                                                           >  6:357225/1‑149 (MQ=255)                                                                           accAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGAcc                                                                           >  2:104646/2‑149 (MQ=255)                                                                                    cGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTgg                                                                  <  1:284901/149‑1 (MQ=255)                                                                                          ccTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGtga                                                                                 >  7:273816/1‑128 (MQ=255)                                                                                          ccTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATg                                                             <  6:34931/148‑1 (MQ=255)                                                                                           cTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGcc                                                           >  6:316564/1‑149 (MQ=255)                                                                                            tGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGccc                                                          >  3:207857/1‑149 (MQ=255)                                                                                                     gcgATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCAc                                                 <  4:207857/149‑1 (MQ=255)                                                                                                       gATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCt                                               <  1:291982/149‑1 (MQ=255)                                                                                                         tGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTgg                                             >  3:168416/1‑149 (MQ=255)                                                                                                            aaGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTc                                                                                                                    <  2:294366/76‑1 (MQ=255)                                                                                                            aaGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTc                                                                                                                    >  1:294366/1‑76 (MQ=255)                                                                                                            aaGGGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCGCGAGCAGGCGCGCCGGCAGCGGGGCCAGTGGGTCGACAGGCCTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCg                                           <  1:104646/149‑1 (MQ=255)                                                                                                                  tgtCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAgcgc                                    <  1:39877/149‑1 (MQ=255)                                                                                                                   gtCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCAcgtcg                                                                                          >  4:264688/1‑94 (MQ=255)                                                                                                                   gtCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCAcgtcg                                                                                          <  3:264688/94‑1 (MQ=255)                                                                                                                    tCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGcgcg                                   >  1:152902/1‑148 (MQ=255)                                                                                                                    tCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGcgcg                                   <  5:316564/148‑1 (MQ=255)                                                                                                                      cGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTa                                        <  3:127246/141‑1 (MQ=255)                                                                                                                      cGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTa                                        >  4:127246/1‑141 (MQ=255)                                                                                                                      cGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGAc                                >  8:120241/1‑149 (MQ=255)                                                                                                                          cgcACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTg                            <  5:357225/149‑1 (MQ=255)                                                                                                                           cgacgacgtgctgcgcatgcaacctgTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGc                                                                                                                      <  4:150698‑M1/33‑1 (MQ=255)                                                                                                                           cgacgacgtgctgcgcatgcaacctgTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGc                                                                                                                      >  3:150698‑M1/27‑59 (MQ=255)                                                                                                                             aCCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGc                          >  8:18101/1‑148 (MQ=255)                                                                                                                               cTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAg                       >  5:275539/1‑149 (MQ=255)                                                                                                                                  ggCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGt                              <  6:348040/139‑1 (MQ=255)                                                                                                                                  ggCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGt                              >  5:348040/1‑139 (MQ=255)                                                                                                                                  ggCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGggt                    <  7:120241/149‑1 (MQ=255)                                                                                                                                    cccAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGggtcg                  <  2:152902/149‑1 (MQ=255)                                                                                                                                      cAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGggtcggt                <  6:168947/149‑1 (MQ=255)                                                                                                                                                    cTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCggg  <  8:53266/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ACTGAGGCCCAGTCCTAGCAAGTTGGCGGCGATGGTGCGCACATCGGCGAGCATCTGCACGTAGCTGATCGAACGCCAGGCACCGTCTGCCTGGCGTGCCGCGATGAAAGTGGTGTCCGGGCGCACCTGGGCCCAATGCACCAGGCGCTCGAGCAGGCGCGCCGGCAGCGGCGCCAGTGGCTCGACAGG‑TTGCATGCGCAGCACGTCGTCGACGTGACTGACCTGCACCTGGGGATGCCCGATGGCCACCTGGCGGTAGCGCGGACGTTGGCCAGGGTCGGTCGACCCTGAGCGGG  >  NC_002947/3796145‑3796440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.