New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3958559	44 (0.830)	3 (0.060)	3/240	NT	6.9%	coding (1826/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	= 3958588	39 (0.780)					coding (1797/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

CACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGT  >  NC_002947/3958417‑3958707                                                                                                                                               |                                                                                                                                                     cACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACg                                                                                                                                                >  1:166968/1‑149 (MQ=255)   cGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCggg                                                                                                                                                     <  1:343838/142‑1 (MQ=255)   cGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCggg                                                                                                                                                     >  2:343838/1‑142 (MQ=255)        ttGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGAt                                                                                                                                         >  6:218341/1‑149 (MQ=255)                   cgcCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCg                                                                                                                              <  7:317200/149‑1 (MQ=255)                      cTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCg                                                                                                                           >  1:294696/1‑149 (MQ=255)                       tCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCg                                                                                                                           >  6:2481/1‑148 (MQ=255)                          cTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGtacgccgattccggccatcgtgccgttgccc                                                                                                                       <  4:125470‑M1/149‑32 (MQ=255)                          cTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAcc                                                                                                                       >  2:316454‑M2/1‑147 (MQ=255)                                tGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGaa                                                                                                                                 <  2:6741/133‑1 (MQ=255)                                tGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGaa                                                                                                                                 >  1:6741/1‑133 (MQ=255)                                  gtcgtcATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACg                                                                                                                <  5:2481/148‑1 (MQ=255)                                  gtcgtcATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGa                                                                                                               <  2:333431/149‑1 (MQ=255)                                     gtcATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtct                                                                                                            >  7:259799/1‑149 (MQ=255)                                      tcatcaTCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                           <  5:218341/149‑1 (MQ=255)                                      tcatcaTCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                           <  3:343692/149‑1 (MQ=255)                                      tcatcaTCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                           >  4:177804/1‑149 (MQ=255)                                      tcatcaTCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                           >  1:44998/1‑149 (MQ=255)                                        atcatcCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGACCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAccgg                                                                                                                     >  4:323637‑M2/1‑133 (MQ=255)                                        atcatcCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGACCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAccgg                                                                                                                     <  3:323637‑M2/137‑5 (MQ=255)                                         tcatcCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGtacgccgattccggccatcgtgccgttgcccggcaaggc                                                                                                               <  4:271455‑M1/142‑40 (MQ=255)                                         tcatcCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGtacgccgattccggccatcgtgccgttgcccggcaaggc                                                                                                               >  3:271455‑M1/1‑103 (MQ=255)                                             ccTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGcc                                                                                                                                     <  4:124438/116‑1 (MQ=255)                                             ccTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGcc                                                                                                                                     >  3:124438/1‑116 (MQ=255)                                              cTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCg                                                                                                    <  8:259799/148‑1 (MQ=255)                                                    ttCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAAc                                                                                                                 <  8:242825/129‑1 (MQ=255)                                                    ttCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAggg                                                                                             >  7:285086/1‑149 (MQ=255)                                                     tCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGc                                                                                                                                      >  5:211495/1‑107 (MQ=255)                                                     tCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGc                                                                                                                                      <  6:211495/107‑1 (MQ=255)                                                             atcatcGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGgcgc                                                                                    >  1:176687/1‑149 (MQ=255)                                                                         ggcAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                           <  2:215475/114‑1 (MQ=255)                                                                         ggcAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                           >  1:215475/1‑114 (MQ=255)                                                                                       cGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAg                                                           <  2:294696/148‑1 (MQ=255)                                                                                          aaaGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGc                                                        >  2:38275/1‑148 (MQ=255)                                                                                                 gggCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACgg                                                  <  8:285086/147‑1 (MQ=255)                                                                                                     acgaccacgacTTTGCCGGGCATGGGCGCCTTGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACg                                                              >  1:28258/1‑131 (MQ=255)                                                                                                     acgaccacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACg                                                              <  2:335448/131‑1 (MQ=255)                                                                                                     acgaccacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACg                                                              >  1:335448/1‑131 (MQ=255)                                                                                                     acgaccacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACg                                                              <  2:28258/131‑1 (MQ=255)                                                                                                       gaccacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACtgt                                          <  2:166968/149‑1 (MQ=255)                                                                                                        accacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAgg                                                          >  6:36174/1‑132 (MQ=255)                                                                                                        accacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAgg                                                          <  5:36174/132‑1 (MQ=255)                                                                                                          cacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTgg                                        >  1:189010/1‑148 (MQ=255)                                                                                                             gacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGc                                    >  5:206106/1‑149 (MQ=255)                                                                                                             gacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGc                                    >  2:320100/1‑149 (MQ=255)                                                                                                               cTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCa                                  >  1:327761/1‑149 (MQ=255)                                                                                                               cTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCa                                  >  3:113726/1‑149 (MQ=255)                                                                                                                       ggCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGcc                          <  2:327761/149‑1 (MQ=255)                                                                                                                       ggCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGcc                          <  4:113726/149‑1 (MQ=255)                                                                                                                         cATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCt                        <  6:206106/149‑1 (MQ=255)                                                                                                                             ggCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGccc                    >  5:59462/1‑149 (MQ=255)                                                                                                                                      gCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAccggcaaggccatggcgcccatgcccggcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatga                  >  3:271455‑M2/1‑39 (MQ=255)                                                                                                                                      gCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAccggcaaggccatggcgcccatgcccggcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatga                  <  4:271455‑M2/142‑104 (MQ=255)                                                                                                                                        cTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTc           >  6:355400/1‑147 (MQ=255)                                                                                                                                            ccGGtacgccgattccggccatcgtgccgttgcccggcaaggtcatggcgcccatgcccggcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatgat                 >  4:323637‑M1/1‑4 (MQ=255)                                                                                                                                            ccGGtacgccgattccggccatcgtgccgttgcccggcaaggtcatggcgcccatgcccggcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatgat                 <  3:323637‑M1/137‑134 (MQ=255)                                                                                                                                              ggtacgccgattccggccatcgtgccgttgcccggcaaggccatggcgcccatgcccggcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatgatgacgaccacgccag   >  2:316454‑M1/1‑2 (MQ=255)                                                                                                                                              gggCAACGGCACGATGGCCGGAATCGGCGTAccggcaaggccatggcgcccatgcccggcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatgatgacgaccacgccag   <  4:125470‑M2/149‑119 (MQ=255)                                                                                                                                               ggCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGt  <  1:38275/149‑1 (MQ=255)                                                                                                                                               ggCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGt  <  5:355400/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     CACGGCCTTGCGCACGGGCGCCTCACTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGT  >  NC_002947/3958417‑3958707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.