New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3958559	44 (0.830)	3 (0.060)	3/240	NT	6.9%	coding (1826/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	NC_002947	= 3958588	39 (0.780)					coding (1797/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

CTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGTGCCTTCTTCGAACAC  >  NC_002947/3958442‑3958722                                                                                                                                                   |                                                                                                                                       cTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAcc                                                                                                                                      >  2:316454‑M2/1‑147 (MQ=255)         gtcgtcATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACg                                                                                                                               <  5:2481/148‑1 (MQ=255)         gtcgtcATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGa                                                                                                                              <  2:333431/149‑1 (MQ=255)            gtcATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtct                                                                                                                           >  7:259799/1‑149 (MQ=255)             tcatcaTCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                                          >  4:177804/1‑149 (MQ=255)             tcatcaTCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                                          <  3:343692/149‑1 (MQ=255)             tcatcaTCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                                          <  5:218341/149‑1 (MQ=255)             tcatcaTCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                                          >  1:44998/1‑149 (MQ=255)               atcatcCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGACCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAccgg                                                                                                                                    >  4:323637‑M2/1‑133 (MQ=255)               atcatcCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGACCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAccgg                                                                                                                                    <  3:323637‑M2/137‑5 (MQ=255)                     cTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCg                                                                                                                   <  8:259799/148‑1 (MQ=255)                           ttCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAAc                                                                                                                                <  8:242825/129‑1 (MQ=255)                           ttCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAggg                                                                                                            >  7:285086/1‑149 (MQ=255)                                    atcatcGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGgcgc                                                                                                   >  1:176687/1‑149 (MQ=255)                                                ggcAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                                          <  2:215475/114‑1 (MQ=255)                                                ggcAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGAtctc                                                                                                                          >  1:215475/1‑114 (MQ=255)                                                              cGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAg                                                                          <  2:294696/148‑1 (MQ=255)                                                                 aaaGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGc                                                                       >  2:38275/1‑148 (MQ=255)                                                                        gggCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACgg                                                                 <  8:285086/147‑1 (MQ=255)                                                                            acgaccacgacTTTGCCGGGCATGGGCGCCTTGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACg                                                                             >  1:28258/1‑131 (MQ=255)                                                                            acgaccacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACg                                                                             <  2:28258/131‑1 (MQ=255)                                                                            acgaccacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACg                                                                             <  2:335448/131‑1 (MQ=255)                                                                            acgaccacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACg                                                                             >  1:335448/1‑131 (MQ=255)                                                                              gaccacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACtgt                                                         <  2:166968/149‑1 (MQ=255)                                                                               accacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAgg                                                                         >  6:36174/1‑132 (MQ=255)                                                                               accacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAgg                                                                         <  5:36174/132‑1 (MQ=255)                                                                                 cacgacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTgg                                                       >  1:189010/1‑148 (MQ=255)                                                                                    gacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGc                                                   >  2:320100/1‑149 (MQ=255)                                                                                    gacTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGc                                                   >  5:206106/1‑149 (MQ=255)                                                                                      cTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCa                                                 >  1:327761/1‑149 (MQ=255)                                                                                      cTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCa                                                 >  3:113726/1‑149 (MQ=255)                                                                                              ggCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGcc                                         <  4:113726/149‑1 (MQ=255)                                                                                              ggCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGcc                                         <  2:327761/149‑1 (MQ=255)                                                                                                cATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCt                                       <  6:206106/149‑1 (MQ=255)                                                                                                    ggCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGccc                                   >  5:59462/1‑149 (MQ=255)                                                                                                             gCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAccggcaaggccatggcgcccatgcccggcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatga                                 >  3:271455‑M2/1‑39 (MQ=255)                                                                                                             gCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTAccggcaaggccatggcgcccatgcccggcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatga                                 <  4:271455‑M2/142‑104 (MQ=255)                                                                                                               cTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTc                          >  6:355400/1‑147 (MQ=255)                                                                                                                     gggCAACGGCACGATGGCCGGAATCGGCGTAccggcaaggccatggcgcccatgcccggcaaagtcgtggtcgtgcccaagctttccgaagcattggttgccgccaacgatgatgaccacgaagacgaggatgatgacgaccacgccag                  <  4:125470‑M2/149‑119 (MQ=255)                                                                                                                     ggacAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGcgcg                  >  2:164381/4‑149 (MQ=255)                                                                                                                      ggCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGt                 <  5:355400/149‑1 (MQ=255)                                                                                                                      ggCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGt                 <  1:38275/149‑1 (MQ=255)                                                                                                                        cAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGTGc               <  2:44998/149‑1 (MQ=255)                                                                                                                        cAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGTGc               <  2:176687/149‑1 (MQ=255)                                                                                                                              cACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTAc                                                                              >  5:347073/1‑80 (MQ=255)                                                                                                                              cACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTAc                                                                              <  6:347073/80‑1 (MQ=255)                                                                                                                                       cGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGTGCCTTCTTCGAacac  <  4:341257/147‑1 (MQ=255)                                                                                                                                       cGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGTGCCTTCTTCGAacac  >  3:341257/1‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                       CTGGCGTGGTCGTCATCATCCTCGTCTTCGTGGTCATCATCGTTGGCGGCAACCAATGCTTCGGAAAGCTTGGGCACGACCACGACTTTGCCGGGCATGGGCGCCATGGCCTTGCCGGGCAACGGCACGATGGCCGGAATCGGCGTACCGGCAACGATCTCGCCATCGGGCAGGGCCCGGGCGCCAACGGCCGGCTTACCGCTACGCAGGGCAAACGGGATACTGTGGAAGCCATTCTCGCCCTGCCCGCTTACCTCCAGGCGCGTGCCTTCTTCGAACAC  >  NC_002947/3958442‑3958722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.