New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4012710 =	37 (0.700)	3 (0.060)	3/240	NT	6.6%	coding (546/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase
	?	NC_002947	4012765 =	50 (1.000)					coding (601/900 nt)	mvaB	hydroxymethylglutaryl‑CoA lyase

GCCACGGCATGCGCGTGCGCGGGTATGTGTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTC  >  NC_002947/4012562‑4012854                                                                                                                                                     |                                                                                                                                                 tattgccggtagcacccttggcgtaagggcagccgcccagcccggctaccgagctgtcgaatacgctgatgccctcgagcaggctggcatagacgttagccaaggcctggccgtaagtgtcatggaagtgtccggccaactgctcgcgc                                                                                                                                                  <  3:342126‑M1/1‑1 (MQ=255) tattgccggtagcacccttggcgtaagggcagccgcccagcccggctaccgagctgtcgaatacgctgatgccctcgagcaggctggcatagacgttagccaaggcctggccgtaagtgtcatggaagtgtccggccaactgctcgcgc                                                                                                                                                  >  4:342126‑M1/149‑149 (MQ=255)     gccggtagcacccttggcgtaagggcagccgcccagcccggctaccgagctgtcgaatacgctgatgccctcgagcaggctggcatagacgttagccaaggcctggccgtaagtgtcatggaagtgtccggccaactgctcgcgCGGt                                                                                                                                               >  6:53565‑M1/145‑148 (MQ=255)     gccggtagcacccttggcgtaagggcagccgcccagcccggctaccgagctgtcgaatacgctgatgccctcgagcaggctggcatagacgttagccaaggcctggccgtaagtgtcatggaagtgtccggccaactgctcgcgCGGTa                                                                                                                                              <  2:62680‑M1/5‑1 (MQ=255)      ggCATGCGCGTGCGCGGGTATGTGTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTAc                                                                                                                                             <  4:292922/149‑1 (MQ=255)                  cgcgGGTATGTGTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGacac                                                                                                                                 <  3:262816/149‑1 (MQ=255)                   gcgGGTATGTGTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGAGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACAcc                                                                                                                                >  7:119599/1‑149 (MQ=255)                         aTGTGTCGTGTGTGCTTTGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGc                                                                                                                          >  2:162136/1‑149 (MQ=255)                              tCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGtt                                                                                                                     >  5:286800/1‑149 (MQ=255)                                 tgtgtgCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGa                                                                                                                  <  3:43410/149‑1 (MQ=255)                                     tgCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCAAGACATGGGCTGCTACGAGGTCTCGATGGGTGACACCATAGTCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAggtg                                                                                                              >  1:294303/1‑149 (MQ=255)                                       cTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTAcc                                                                                                                                            <  5:257018/117‑1 (MQ=255)                                       cTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTAcc                                                                                                                                            >  6:257018/1‑117 (MQ=255)                                          ggCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGgtgt                                                                                                          <  6:286800/148‑1 (MQ=255)                                            cTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCgg                                                                                                       <  8:119599/149‑1 (MQ=255)                                                 cTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAg                                                                                                  >  4:291634/1‑149 (MQ=255)                                                     cGAGGGCAAGGGCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCAGGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTAc                                                                                              <  5:204503/149‑1 (MQ=255)                                                       aGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACcg                                                                                            >  5:267805/1‑149 (MQ=255)                                                           gaatacgctgatgccctcgagcaggctggcatagacgttagccaaggcctggccgtaagtgtcatggaagtgtccggccaactgctcgcgCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACcgcgc                                                                                         >  6:87118‑M1/91‑148 (MQ=255)                                                           gaatacgctgatgccctcgagcaggctggcatagacgttagccaaggcctggccgtaagtgtcatggaagtgtccggccaactgctcgcgCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACcgcgc                                                                                         <  5:87118‑M1/58‑1 (MQ=255)                                                               gTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGGCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCa                                                                                    <  5:323707/149‑1 (MQ=255)                                                                 cAGCGCCGAGCAGGTGGTCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGt                                                                                  >  4:297299/1‑149 (MQ=255)                                                                 cAGCGCCGAGCAGGTGGTCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGt                                                                                  >  4:302297/1‑149 (MQ=255)                                                                  aGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGt                                                                                  <  4:341502/148‑1 (MQ=255)                                                                       gccctcgagcaggctggcatagacgttagccaaggcctggccgtaagtgtcatggaagtgtccggccaactgctcgcgCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACcgc                                                                                           <  2:316976‑M1/56‑1 (MQ=255)                                                                                  ccccGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTTGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCAt                                                                 <  1:162136/149‑1 (MQ=255)                                                                                    ccGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGa                                                               >  3:251428/1‑149 (MQ=255)                                                                                      ggTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGaca                                                             <  3:302297/149‑1 (MQ=255)                                                                                      ggTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGaca                                                             <  3:297299/149‑1 (MQ=255)                                                                                                       aCGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTg                                            <  3:291634/149‑1 (MQ=255)                                                                                                         gACATGGGCTGCTAGGAGGTCTCGCTGGGTGACACCATCGGCACCTGTACCTCAGGCTACACCCGACGCCTGTTCGAGGTGGTGTCTGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGc                                          <  1:86959/149‑1 (MQ=255)                                                                                                                     tACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATg                               >  8:269372/1‑148 (MQ=255)                                                                                                                      aCGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACg                                                       <  7:133446/123‑1 (MQ=255)                                                                                                                      aCGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACg                                                       >  8:133446/1‑123 (MQ=255)                                                                                                                       cGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATg                               <  7:269372/146‑1 (MQ=255)                                                                                                                           gTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCt                        >  6:53739/1‑149 (MQ=255)                                                                                                                                     gTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCGAGGc                                                >  3:322673/1‑115 (MQ=255)                                                                                                                                     gTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGc                                                <  4:322673/115‑1 (MQ=255)                                                                                                                                        acacCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATc           <  4:251428/149‑1 (MQ=255)                                                                                                                                          acCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCAt            >  8:159962/1‑146 (MQ=255)                                                                                                                                          acCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCa          <  7:159962/148‑1 (MQ=255)                                                                                                                                            cATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTaa                                       <  7:142365/117‑1 (MQ=255)                                                                                                                                            cATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTaa                                       >  8:142365/1‑117 (MQ=255)                                                                                                                                            cATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCg       >  7:69635/1‑149 (MQ=255)                                                                                                                                                 gCACCGGTACAGCAGGCGACACCCGACGCCTGTTCGATGTTGTTTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTc  <  2:294303/149‑1 (MQ=255)                                                                                                                                                  cACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTc  >  5:40861/1‑148 (MQ=255)                                                                                                                                                   aCCGTTACCGCAGGCGACTCCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTTGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTc                    <  6:214330/129‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GCCACGGCATGCGCGTGCGCGGGTATGTGTCGTGTGTGCTTGGCTGCCCTTACGAGGGCAAGGTCAGCGCCGAGCAGGTGGCCCCGGTGGCCCGCGCCCTGCACGACATGGGCTGCTACGAGGTCTCGCTGGGTGACACCATCGGCACCGGTACCGCAGGCGACACCCGACGCCTGTTCGAGGTGGTGTCGGCCCAGGTACCGCGCGAGCAGTTGGCCGGACACTTCCATGACACTTACGGCCAGGCCTTGGCTAACGTCTATGCCAGCCTGCTCGAGGGCATCAGCGTATTC  >  NC_002947/4012562‑4012854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.