New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4210980	43 (0.810)	4 (0.080)	4/240	NT	8.8%	coding (97/285 nt)	PP_5621	hypothetical protein
	?	NC_002947	= 4210995	42 (0.840)					coding (82/285 nt)	PP_5621	hypothetical protein

GATCAAGCTACCGGCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTC  >  NC_002947/4210834‑4211127                                                                                                                                                   |                                                                                                                                                    gATCAAGCTACCGGCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCt                                                                                                                                                   >  2:313076/1‑149 (MQ=255)     aaGCTACCGGCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCg                                                                                                                                                <  3:333229/148‑1 (MQ=255)           ccGGCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGc                                                                                                                                          >  8:328923/1‑148 (MQ=255)            cGGCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCaa                                                                                                                                        <  1:287111/149‑1 (MQ=255)              gCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGa                                                                                                                                      >  2:302438/1‑149 (MQ=255)                         ccGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCcac                                                                                                                           <  7:328923/149‑1 (MQ=255)                         ccGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCca                                                                                                                            >  6:160864/1‑148 (MQ=255)                                gCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAAt                                                                                                                     <  1:302438/148‑1 (MQ=255)                                  tGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAG                                                                                                                                                     <  4:314818‑M1/114‑1 (MQ=255)                                  tGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAG                                                                                                                                                     >  3:314818‑M1/1‑114 (MQ=255)                                        cTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGActt                                                                                                                                   <  8:147991‑M2/126‑4 (MQ=255)                                          ccATGAAGTGACGCAGCCGGCTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGtcttgcattccgcagcttgcatgcttgtgt                                                                                                                       >  1:189131‑M1/1‑106 (MQ=255)                                          ccATGAAGTGACGCAGCCGGCTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGtcttgcattccgcagcttgcatgcttgtgt                                                                                                                       <  2:189131‑M1/136‑31 (MQ=255)                                           cATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTgg                                                                                                          <  5:160864/148‑1 (MQ=255)                                           cATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGt                                                                                                         <  8:257330/149‑1 (MQ=255)                                           cATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGt                                                                                                         >  3:127096/1‑149 (MQ=255)                                            aTGAAGTGACGCAGCTGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAg                                                                                                                         <  4:331219/132‑1 (MQ=255)                                            aTGAAGTGACGCAGCGGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAg                                                                                                                         >  3:331219/1‑132 (MQ=255)                                            aTGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGtcttgcattccgcagcttgcatgcttgt                                                                                                                         >  7:322796‑M1/1‑104 (MQ=255)                                            aTGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGtcttgcattccgcagcttgcatgcttgt                                                                                                                         <  8:322796‑M1/132‑29 (MQ=255)                                              gAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGcc                                                                                                      >  1:325356/1‑149 (MQ=255)                                                aGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTa                                                                                                    >  5:9593/1‑149 (MQ=255)                                                    aCGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTga                                                                                                <  1:313076/149‑1 (MQ=255)                                                        aGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGaa                                                                                             >  8:134490/1‑148 (MQ=255)                                                               ttGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTtc                                                                                     >  2:338068/1‑149 (MQ=255)                                                                      ttCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTcctcct                                                                                >  3:132020/1‑147 (MQ=255)                                                                         gcgcTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTcagca                                                                           <  5:235912/149‑1 (MQ=255)                                                                           gcTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCagcagc                                                                         <  1:338068/149‑1 (MQ=255)                                                                                ttGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGAAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAAAACCTTTCCTCCTCAGCAGCCACAg                                                                    >  5:272229/1‑149 (MQ=255)                                                                                   aTCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCt                                                                  <  6:100370/148‑1 (MQ=255)                                                                                       gatgatTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTAt                                                             <  4:132020/149‑1 (MQ=255)                                                                                           atTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGcc                                                                        >  7:220170/1‑134 (MQ=255)                                                                                           atTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGcc                                                                        <  8:220170/134‑1 (MQ=255)                                                                                            tttCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGAc                                                         <  4:127096/148‑1 (MQ=255)                                                                                              tCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGt                                                                                                         <  4:158462/98‑1 (MQ=255)                                                                                              tCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGt                                                                                                         >  3:158462/1‑98 (MQ=255)                                                                                                             ttGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAg                                       >  3:155682/1‑149 (MQ=255)                                                                                                               gCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGt                                      <  7:134490/148‑1 (MQ=255)                                                                                                                      aaTCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGa                                  <  4:155682/145‑1 (MQ=255)                                                                                                                        tctcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                        <  1:317267/137‑1 (MQ=255)                                                                                                                        tctcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                        >  2:317267/1‑137 (MQ=255)                                                                                                                        tctcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCAc                            >  1:264862/1‑149 (MQ=255)                                                                                                                          tcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTTCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                        <  1:243055/135‑1 (MQ=255)                                                                                                                          tcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                        >  2:243055/1‑135 (MQ=255)                                                                                                                            cAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTaa                        >  2:121507/1‑149 (MQ=255)                                                                                                                               ccACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGc                     <  1:121507/149‑1 (MQ=255)                                                                                                                                cACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGtt                                     >  1:348274/1‑132 (MQ=255)                                                                                                                                cACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGtt                                     <  2:348274/132‑1 (MQ=255)                                                                                                                                     acacAAGCATGCAAGCTGCGGAATGCAAGActtgcatgcttgtgtcagtggttggagattgagatgcaacctcaaaaaactagaaatcatctgatcaacgagcgcgaagctgcaagccggctgcgtcacttcatgg                            >  1:189131‑M2/1‑30 (MQ=255)                                                                                                                                     acacAAGCATGCAAGCTGCGGAATGCAAGActtgcatgcttgtgtcagtggttggagattgagatgcaacctcaaaaaactagaaatcatctgatcaacgagcgcgaagctgcaagccggctgcgtcacttcatgg                            <  2:189131‑M2/136‑107 (MQ=255)                                                                                                                                       acaAGCATGCAAGCTGCGGAATGCAAGActtgcatgcttgtgtcagtggttggagattgagatgcaacctcaaaaaactagaaatcatctgatcaacgagcgcgaagctgcaagtcggctgcgtcacttcat                              >  7:322796‑M2/1‑28 (MQ=255)                                                                                                                                       acaAGCATGCAAGCTGCGGAATGCAAGActtgcatgcttgtgtcagtggttggagattgagatgcaacctcaaaaaactagaaatcatctgatcaacgagcgcgaagctgcaagtcggctgcgtcacttcat                              <  8:322796‑M2/132‑105 (MQ=255)                                                                                                                                       acaAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGt             <  6:9593/149‑1 (MQ=255)                                                                                                                                         aaGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGc                                             >  1:265454/1‑115 (MQ=255)                                                                                                                                         aaGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGc                                             <  2:265454/115‑1 (MQ=255)                                                                                                                                         aaGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTAt           <  6:272229/149‑1 (MQ=255)                                                                                                                                                 aaGtcttgcattccgcagcttgcatgcttgtgtcagtggttggagattgagatgcaacctcaaaaaactagaaatcatctgatcaacgagcgcgaagctgcaagtcggctgcgtcacttcatggag                          <  8:147991‑M1/126‑124 (MQ=255)                                                                                                                                                  aGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTc  <  2:264862/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GATCAAGCTACCGGCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTC  >  NC_002947/4210834‑4211127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.