New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4210980	43 (0.810)	4 (0.080)	4/240	NT	8.8%	coding (97/285 nt)	PP_5621	hypothetical protein
	?	NC_002947	= 4210995	42 (0.840)					coding (82/285 nt)	PP_5621	hypothetical protein

GCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTCAGTTAGCCAGCC  >  NC_002947/4210847‑4211139                                                                                                                                                     |                                                                                                                                                 gCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGa                                                                                                                                                  >  2:302438/1‑149 (MQ=255)            ccGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCcac                                                                                                                                       <  7:328923/149‑1 (MQ=255)            ccGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCca                                                                                                                                        >  6:160864/1‑148 (MQ=255)                   gCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAAt                                                                                                                                 <  1:302438/148‑1 (MQ=255)                           cTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGActt                                                                                                                                               <  8:147991‑M2/126‑4 (MQ=255)                              cATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTgg                                                                                                                      <  5:160864/148‑1 (MQ=255)                              cATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGt                                                                                                                     <  8:257330/149‑1 (MQ=255)                              cATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGt                                                                                                                     >  3:127096/1‑149 (MQ=255)                               aTGAAGTGACGCAGCTGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAg                                                                                                                                     <  4:331219/132‑1 (MQ=255)                               aTGAAGTGACGCAGCGGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAg                                                                                                                                     >  3:331219/1‑132 (MQ=255)                                 gAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGcc                                                                                                                  >  1:325356/1‑149 (MQ=255)                                   aGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTa                                                                                                                >  5:9593/1‑149 (MQ=255)                                       aCGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTga                                                                                                            <  1:313076/149‑1 (MQ=255)                                           aGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGaa                                                                                                         >  8:134490/1‑148 (MQ=255)                                                  ttGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTtc                                                                                                 >  2:338068/1‑149 (MQ=255)                                                         ttCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTcctcct                                                                                            >  3:132020/1‑147 (MQ=255)                                                            gcgcTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTcagca                                                                                       <  5:235912/149‑1 (MQ=255)                                                              gcTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCagcagc                                                                                     <  1:338068/149‑1 (MQ=255)                                                                   ttGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGAAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAAAACCTTTCCTCCTCAGCAGCCACAg                                                                                >  5:272229/1‑149 (MQ=255)                                                                      aTCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCt                                                                              <  6:100370/148‑1 (MQ=255)                                                                          gatgatTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTAt                                                                         <  4:132020/149‑1 (MQ=255)                                                                              atTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGcc                                                                                    <  8:220170/134‑1 (MQ=255)                                                                              atTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGcc                                                                                    >  7:220170/1‑134 (MQ=255)                                                                               tttCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGAc                                                                     <  4:127096/148‑1 (MQ=255)                                                                                 tCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGt                                                                                                                     >  3:158462/1‑98 (MQ=255)                                                                                 tCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGt                                                                                                                     <  4:158462/98‑1 (MQ=255)                                                                                                ttGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAg                                                   >  3:155682/1‑149 (MQ=255)                                                                                                  gCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGt                                                  <  7:134490/148‑1 (MQ=255)                                                                                                         aaTCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGa                                              <  4:155682/145‑1 (MQ=255)                                                                                                           tctcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                                    <  1:317267/137‑1 (MQ=255)                                                                                                           tctcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                                    >  2:317267/1‑137 (MQ=255)                                                                                                           tctcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCAc                                        >  1:264862/1‑149 (MQ=255)                                                                                                             tcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTTCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                                    <  1:243055/135‑1 (MQ=255)                                                                                                             tcCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                                    >  2:243055/1‑135 (MQ=255)                                                                                                               cAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTaa                                    >  2:121507/1‑149 (MQ=255)                                                                                                                  ccACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGc                                 <  1:121507/149‑1 (MQ=255)                                                                                                                   cACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGtt                                                 >  1:348274/1‑132 (MQ=255)                                                                                                                   cACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGtt                                                 <  2:348274/132‑1 (MQ=255)                                                                                                                        acacAAGCATGCAAGCTGCGGAATGCAAGActtgcatgcttgtgtcagtggttggagattgagatgcaacctcaaaaaactagaaatcatctgatcaacgagcgcgaagctgcaagccggctgcgtcacttcatgg                                        >  1:189131‑M2/1‑30 (MQ=255)                                                                                                                        acacAAGCATGCAAGCTGCGGAATGCAAGActtgcatgcttgtgtcagtggttggagattgagatgcaacctcaaaaaactagaaatcatctgatcaacgagcgcgaagctgcaagccggctgcgtcacttcatgg                                        <  2:189131‑M2/136‑107 (MQ=255)                                                                                                                          acaAGCATGCAAGCTGCGGAATGCAAGActtgcatgcttgtgtcagtggttggagattgagatgcaacctcaaaaaactagaaatcatctgatcaacgagcgcgaagctgcaagtcggctgcgtcacttcat                                          >  7:322796‑M2/1‑28 (MQ=255)                                                                                                                          acaAGCATGCAAGCTGCGGAATGCAAGActtgcatgcttgtgtcagtggttggagattgagatgcaacctcaaaaaactagaaatcatctgatcaacgagcgcgaagctgcaagtcggctgcgtcacttcat                                          <  8:322796‑M2/132‑105 (MQ=255)                                                                                                                          acaAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGt                         <  6:9593/149‑1 (MQ=255)                                                                                                                            aaGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGc                                                         <  2:265454/115‑1 (MQ=255)                                                                                                                            aaGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGc                                                         >  1:265454/1‑115 (MQ=255)                                                                                                                            aaGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTAt                       <  6:272229/149‑1 (MQ=255)                                                                                                                                     aGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTc              <  2:264862/149‑1 (MQ=255)                                                                                                                                          cGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTCAGTTa         <  2:325356/149‑1 (MQ=255)                                                                                                                                               tGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTCa             >  6:274350/1‑140 (MQ=255)                                                                                                                                               tGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTCa             <  5:274350/140‑1 (MQ=255)                                                                                                                                                  aaGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                                    >  7:251040/1‑98 (MQ=255)                                                                                                                                                  aaGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGa                                                    <  8:251040/98‑1 (MQ=255)                                                                                                                                                  aaGACTTGCATCCACAGCAATGCTGCATCTCGTGCCTACTGAGAATACCTTACCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTCAGTTagccagcc  >  3:251665/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GCGATGAGCTCCCGGATGGCTGTCGCCTCCATGAAGTGACGCAGCCGACTTGCAGCTTCGCGCTCGTTGATCAGATGATTTCTAGTTTTTTGAGGTTGCATCTCAATCTCCAACCACTGACACAAGCATGCAAGCTGCGGAATGCAAGACTTGCATCCACAGCAATGCTGCATCTGGTGCCTACTGAGAATACCTTTCCTCCTCAGCAGCCACAGCTTGTATTGACTCACCGTCTCGCCTGGAGTTAGAAATCACCTAATGCAAGAGCGTATGACTTTTTCAGTTAGCCAGCC  >  NC_002947/4210847‑4211139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.