New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4592540	27 (0.510)	3 (0.060)	3/240	NT	8.4%	coding (799/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
	?	NC_002947	= 4592565	40 (0.800)					coding (824/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha

CCGATCAGCACGGCAACTGCCTGTACCTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTG  >  NC_002947/4592397‑4592685                                                                                                                                                |                                                                                                                                                   ccGATCAGCACGGCAACTGCCTGTACCTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAg                                                                                                                                               >  5:345861/1‑149 (MQ=255)            ggCAACTGCCTGTACCTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTa                                                                                                                                    >  5:127860/1‑149 (MQ=255)               aaCTGCCTGTACCTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGATGCGTGCCGCCCAGGCTATCgg                                                                                                                                       >  6:101379/1‑143 (MQ=255)               aaCTGCCTGTACCTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGATGCGTGCCGCCCAGGCTATCgg                                                                                                                                       <  5:101379/143‑1 (MQ=255)                           cTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCcggcac                                                                                                                     <  6:256707‑M2/149‑7 (MQ=255)                           cTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCACCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCcggcac                                                                                                                     <  7:322943‑M2/149‑7 (MQ=255)                              aacgaacgCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGgcacccacgtaaccgatagcctgggcggcacg                                                                                                                    <  4:34842‑M1/147‑33 (MQ=255)                              aacgaacgCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGt                                                                                                                 >  8:104582/1‑149 (MQ=255)                                        aCTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTg                                                                                                       <  2:162424/149‑1 (MQ=255)                                          tGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGgcacccacgtaaccgatagcctgggcggcacgcac                                                                                                                 >  6:91665‑M1/1‑103 (MQ=255)                                          tGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGgcacccacgtaaccgatagcctgggcggcacgcac                                                                                                                 <  5:91665‑M1/138‑36 (MQ=255)                                          tGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCt                                                                                                        >  7:263942/1‑146 (MQ=255)                                          tGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCt                                                                                                        <  8:263942/146‑1 (MQ=255)                                          tGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCt                                                                                                     >  2:113394/1‑149 (MQ=255)                                               cATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGAt                                                                                                 <  1:113394/148‑1 (MQ=255)                                                       gccgccATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACTGTGGAGTTTCTGCTTGATGCCCgcggc                                                                                        <  5:243908/149‑1 (MQ=255)                                                                aGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCACCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAAttcttc                                                                               <  8:322943/149‑1 (MQ=255)                                                                  aaGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGTGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAAttcttctt                                                                             >  2:270643/1‑149 (MQ=255)                                                                    ggtggtGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGGTACGTGGGTGCCGGC‑ACGGTGGAGGTTCTGGTTGATGCCCGCGGCGAATTCTTCTTCa                                                                           >  1:259187/1‑149 (MQ=255)                                                                      tggtggAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATg                                                                         <  5:256707/149‑1 (MQ=255)                                                                      tggtggAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATg                                                                         <  6:345861/149‑1 (MQ=255)                                                                                 gCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGAt                                                                                                 >  7:135158/1‑114 (MQ=255)                                                                                 gCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGAt                                                                                                 <  8:135158/114‑1 (MQ=255)                                                                                    ccTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGTGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGGCGGCAAAGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTc                                                            <  1:270643/149‑1 (MQ=255)                                                                                          cccGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGc                                                      >  3:318565/1‑148 (MQ=255)                                                                                               ccTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTgg                                                <  4:318565/149‑1 (MQ=255)                                                                                                       ccGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCg                                        >  7:147140/1‑149 (MQ=255)                                                                                                               cgcCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCAcc                                  <  6:127860/147‑1 (MQ=255)                                                                                                                gcCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAg                               >  5:86516/1‑149 (MQ=255)                                                                                                                  cGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGc                             <  6:86516/149‑1 (MQ=255)                                                                                                                                       gtgcgtgcCGCCCAGGCTATCGGTTACGTGGGTGCcggcacgcaccgccgcttcgcccatggcccggcgcagttcgggcgacaggccgggggcaggggcctcttccaccaccttctgatggcggcgctgaatggaaca                    >  6:91665‑M2/1‑35 (MQ=255)                                                                                                                                       gtgcgtgcCGCCCAGGCTATCGGTTACGTGGGTGCcggcacgcaccgccgcttcgcccatggcccggcgcagttcgggcgacaggccgggggcaggggcctcttccaccaccttctgatggcggcgctgaatggaaca                    <  5:91665‑M2/138‑104 (MQ=255)                                                                                                                                       gtgcgtgcCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCttgt        >  1:244678/1‑149 (MQ=255)                                                                                                                                          cgtgcCGCCCAGGCTATCGGTTACGTGGGTGCcggcacgcaccgccgcttcgcccatggcccggcgcagttcgggcgacaggccgggggcaggggcctcttccaccaccttctgatggcggcgctgaatggaacagtcgcgttcgtt        <  4:34842‑M2/147‑116 (MQ=255)                                                                                                                                           gtgcCGgcacccacgtaaccgatagcctgggcggcacgcaccgccgcttcgcccatggcccggcgcagttcgggtgacaggccgggggcaggggcctcttccaccaccttctgatggcggcgctgaatggaacagtcgcgttcgttgag     <  7:322943‑M1/149‑144 (MQ=255)                                                                                                                                           gtgcCGgcacccacgtaaccgatagcctgggcggcacgcaccgccgcttcgcccatggcccggcgcagttcgggcgacaggccgggggcaggggcctcttccaccaccttctgatggcggcgctgaatggaacagtcgcgttcgttgag     <  6:256707‑M1/149‑144 (MQ=255)                                                                                                                                           gtgcCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGa              <  7:58374/139‑1 (MQ=255)                                                                                                                                           gtgcCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGa              >  8:58374/1‑139 (MQ=255)                                                                                                                                            tgcCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCt   <  7:104582/149‑1 (MQ=255)                                                                                                                                             gccgccCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTg  >  6:245678/1‑149 (MQ=255)                                                                                                                                              ccgccCAGGCTATCGGTTACGTGGGTGCCGGC‑ACTGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTg  <  2:259187/148‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   CCGATCAGCACGGCAACTGCCTGTACCTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTG  >  NC_002947/4592397‑4592685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.