New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4592540	27 (0.510)	3 (0.060)	3/240	NT	8.4%	coding (799/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha
	?	NC_002947	= 4592565	40 (0.800)					coding (824/1953 nt)	mccA	methylcrotonyl‑CoA carboxylase biotin‑containing subunit alpha

CTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGCCTGCGGCGAAG  >  NC_002947/4592423‑4592711                                                                                                                                               |                                                                                                                                                    cTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCcggcac                                                                                                                                               <  6:256707‑M2/149‑7 (MQ=255) cTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCACCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCcggcac                                                                                                                                               <  7:322943‑M2/149‑7 (MQ=255)    aacgaacgCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGt                                                                                                                                           >  8:104582/1‑149 (MQ=255)              aCTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTg                                                                                                                                 <  2:162424/149‑1 (MQ=255)                tGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCt                                                                                                                                  >  7:263942/1‑146 (MQ=255)                tGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCt                                                                                                                                  <  8:263942/146‑1 (MQ=255)                tGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCt                                                                                                                               >  2:113394/1‑149 (MQ=255)                     cATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGAt                                                                                                                           <  1:113394/148‑1 (MQ=255)                             gccgccATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACTGTGGAGTTTCTGCTTGATGCCCgcggc                                                                                                                  <  5:243908/149‑1 (MQ=255)                                      aGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCACCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAAttcttc                                                                                                         <  8:322943/149‑1 (MQ=255)                                        aaGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGTGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAAttcttctt                                                                                                       >  2:270643/1‑149 (MQ=255)                                          ggtggtGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGGTACGTGGGTGCCGGC‑ACGGTGGAGGTTCTGGTTGATGCCCGCGGCGAATTCTTCTTCa                                                                                                     >  1:259187/1‑149 (MQ=255)                                            tggtggAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATg                                                                                                   <  5:256707/149‑1 (MQ=255)                                            tggtggAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATg                                                                                                   <  6:345861/149‑1 (MQ=255)                                                       gCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGAt                                                                                                                           >  7:135158/1‑114 (MQ=255)                                                       gCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGAt                                                                                                                           <  8:135158/114‑1 (MQ=255)                                                          ccTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGTGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGGCGGCAAAGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTc                                                                                      <  1:270643/149‑1 (MQ=255)                                                                cccGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGc                                                                                >  3:318565/1‑148 (MQ=255)                                                                     ccTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTgg                                                                          <  4:318565/149‑1 (MQ=255)                                                                             ccGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCg                                                                  >  7:147140/1‑149 (MQ=255)                                                                                     cgcCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCAcc                                                            <  6:127860/147‑1 (MQ=255)                                                                                      gcCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAg                                                         >  5:86516/1‑149 (MQ=255)                                                                                        cGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGc                                                       <  6:86516/149‑1 (MQ=255)                                                                                                             gtgcgtgcCGCCCAGGCTATCGGTTACGTGGGTGCcggcacgcaccgccgcttcgcccatggcccggcgcagttcgggcgacaggccgggggcaggggcctcttccaccaccttctgatggcggcgctgaatggaaca                                              >  6:91665‑M2/1‑35 (MQ=255)                                                                                                             gtgcgtgcCGCCCAGGCTATCGGTTACGTGGGTGCcggcacgcaccgccgcttcgcccatggcccggcgcagttcgggcgacaggccgggggcaggggcctcttccaccaccttctgatggcggcgctgaatggaaca                                              <  5:91665‑M2/138‑104 (MQ=255)                                                                                                             gtgcgtgcCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCttgt                                  >  1:244678/1‑149 (MQ=255)                                                                                                                cgtgcCGCCCAGGCTATCGGTTACGTGGGTGCcggcacgcaccgccgcttcgcccatggcccggcgcagttcgggcgacaggccgggggcaggggcctcttccaccaccttctgatggcggcgctgaatggaacagtcgcgttcgtt                                  <  4:34842‑M2/147‑116 (MQ=255)                                                                                                                 gtgcCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGa                                        >  8:58374/1‑139 (MQ=255)                                                                                                                 gtgcCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGa                                        <  7:58374/139‑1 (MQ=255)                                                                                                                  tgcCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCt                             <  7:104582/149‑1 (MQ=255)                                                                                                                   gccgccCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTg                            >  6:245678/1‑149 (MQ=255)                                                                                                                    ccgccCAGGCTATCGGTTACGTGGGTGCCGGC‑ACTGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTg                            <  2:259187/148‑1 (MQ=255)                                                                                                                       cccAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCa                         >  4:12029/1‑148 (MQ=255)                                                                                                                               aTCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCttg                                   <  1:145326/130‑1 (MQ=255)                                                                                                                               aTCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCttg                                   >  2:145326/1‑130 (MQ=255)                                                                                                                                  ggTTACGTTGGTGCCGGC‑TCGGTTGAGTTTCTGCTTGATGCCCGCGGAGAATTGTTATTCATGGAGATGAACACTCGCCTTGAAGTGAAACACCCTGTCACAGATGCCAt                                                    <  6:182878/110‑1 (MQ=255)                                                                                                                                  ggTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGc             >  5:311506/1‑149 (MQ=255)                                                                                                                                  ggTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGc             <  8:147140/149‑1 (MQ=255)                                                                                                                                    ttACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGc             <  2:149126/147‑1 (MQ=255)                                                                                                                                    ttACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGc             >  1:149126/1‑147 (MQ=255)                                                                                                                                      aCGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTg                            <  7:5747/130‑1 (MQ=255)                                                                                                                                      aCGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTg                            >  8:5747/1‑130 (MQ=255)                                                                                                                                      aCGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGCCTgc         >  3:340753/1‑149 (MQ=255)                                                                                                                                        gTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGCCTgcgg       >  7:114081/1‑149 (MQ=255)                                                                                                                                        gTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGCCTgcgg       >  4:150058/1‑149 (MQ=255)                                                                                                                                        gTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGCCTgcgg       >  5:38144/1‑149 (MQ=255)                                                                                                                                             tGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGCCTGCGGCGAAg  <  6:38144/149‑1 (MQ=255)                                                                                                                                              gCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGcc                                                                                   >  5:361967/1‑67 (MQ=255)                                                                                                                                              gCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGcc                                                                                   <  6:361967/67‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                    CTCAACGAACGCGACTGTTCCATTCAGCGCCGCCATCAGAAGGTGGTGGAAGAGGCCCCTGCCCCCGGCCTGTCGCCCGAACTGCGCCGGGCCATGGGCGAAGCGGCGGTGCGTGCCGCCCAGGCTATCGGTTACGTGGGTGCCGGC‑ACGGTGGAGTTTCTGCTTGATGCCCGCGGCGAATTCTTCTTCATGGAGATGAACACTCGCCTGCAAGTGGAACACCCGGTCACCGAGGCCATAACCGGCCTGGACCTTGTTGCCTGGCAAATTCGCGTGGCCTGCGGCGAAG  >  NC_002947/4592423‑4592711

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.