New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5299051 =	48 (0.910)	3 (0.060)	3/244	NT	5.9%	coding (1051/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
	?	NC_002947	5299093 =	49 (0.970)					coding (1009/2076 nt)	recD	multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease

CGCCGGCCTTAAGGCCACTGCCGGCCAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGC  >  NC_002947/5298907‑5299196                                                                                                                                                  |                                                                                                                                                  gtcagcaccgtgcatcgcctgctcggcagccgcccgggctcgcggcactttcgccatcatgctggcaacccgttgccgttggatgtgctggtggtcgacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgCCtt                                                                                                                                                >  7:202760‑M1/146‑149 (MQ=255)         ttAAGGCCACTGCCGGCCAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑Tcc                                                                                                                                                  >  4:334272/1‑138 (MQ=255)         ttAAGGCCACTGCCGGCCAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑Tcc                                                                                                                                                  <  3:334272/138‑1 (MQ=255)            aGGCCACTGCCGGCCAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCca                                                                                                                                        >  4:71509/1‑145 (MQ=255)            aGGCCACTGCCGGCCAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCca                                                                                                                                        <  3:71509/145‑1 (MQ=255)                cACTGCCGGCCAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCtt                                                                                                                                                >  5:225711/1‑133 (MQ=255)                cACTGCCGGCCAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCtt                                                                                                                                                <  6:225711/133‑1 (MQ=255)                        gCCAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACgcgc                                                                                                                        <  2:215801/149‑1 (MQ=255)                          cAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGccc                                                                                                                      >  2:249925/1‑149 (MQ=255)                                    ccACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCggcggc                                                                                                              >  4:54323/1‑147 (MQ=255)                                     cACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAg                                                                                                           <  3:203327/149‑1 (MQ=255)                                      aCTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAg                                                                                                           >  4:203327/1‑148 (MQ=255)                                          gcggcactttcgccatcatgctggcaacccgttgccgttggatgtgctggtggtcgacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCa                                                                                                        >  7:300098‑M1/105‑148 (MQ=255)                                            ctgctgAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATc                                                                                                      >  3:135204/1‑147 (MQ=255)                                                 gAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAgg                                                                                               >  3:125036/1‑149 (MQ=255)                                                   aGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGtt                                                                                             <  4:135204/149‑1 (MQ=255)                                                     ccACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTgg                                                                                           >  4:83686/1‑149 (MQ=255)                                                      cACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGc                                                                                          <  5:57447/149‑1 (MQ=255)                                                       aCGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGcc                                                                                         <  3:83686/149‑1 (MQ=255)                                                       aCGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGc                                                                                          >  4:251215/1‑148 (MQ=255)                                                              aGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCAttt                                                                                  >  3:281203/1‑149 (MQ=255)                                                                  gCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCa                                                                               <  3:251215/148‑1 (MQ=255)                                                                   aacccgttgccgttggatgtgctggtggtcgacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAgg                                                                                                          <  7:112402‑M1/42‑1 (MQ=255)                                                                   aacccgttgccgttggatgtgctggtggtcgacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAgg                                                                                                          >  8:112402‑M1/80‑121 (MQ=255)                                                                         aGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGatc                                                                       <  3:54323/149‑1 (MQ=255)                                                                          gTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGatca                                                                      >  1:55404/1‑149 (MQ=255)                                                                           tAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCcatca                                                                                     <  6:265853/133‑1 (MQ=255)                                                                           tAAAAGCCATCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCcatca                                                                                     >  5:265853/1‑133 (MQ=255)                                                                             aaaGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGa                                                                                                                             <  7:200055/91‑1 (MQ=255)                                                                             aaaGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGa                                                                                                                             >  8:200055/1‑91 (MQ=255)                                                                               aGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGAc                                                                 <  1:249925/149‑1 (MQ=255)                                                                                       tcAGCATCCCGGCACAGGTCACCCAGCACCGCGCCCGCCTCGACCCAGGCCAACTGGAGCCTTGTCGCCCAGCAGCACCAGACCCGCCCGCGGCGGCAAGGCATCCAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACCCTtcgt                                                          >  1:96829/1‑149 (MQ=255)                                                                                        cAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCcatc                                                                                      <  5:157688/119‑1 (MQ=255)                                                                                        cAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCcatc                                                                                      >  6:157688/1‑119 (MQ=255)                                                                                         aGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTtcgtc                                                         <  4:125036/147‑1 (MQ=255)                                                                                         aGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGa                                                       >  6:220858/1‑149 (MQ=255)                                                                                             tCCCGGCTCAGGTCACGCAGCACCGCGCCGGCGTCGACCGAGGCCAAGTGG‑TCCTTGTCGCCCAGGAGCACCAGACGCGCCGGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATGATCGACGCTTCGTCGaccac                                                   <  2:96829/149‑1 (MQ=255)                                                                                                 ggCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCaa                                                                                                            >  6:334468/1‑88 (MQ=255)                                                                                                 ggCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCaa                                                                                                            <  5:334468/88‑1 (MQ=255)                                                                                                  gCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTAGATCATCGACGCTTCGTCGACCACCAGc                                               >  4:98120/1‑148 (MQ=255)                                                                                                        gTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATc                                          <  5:221089/147‑1 (MQ=255)                                                                                                        gTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATc                                          >  6:221089/1‑147 (MQ=255)                                                                                                              cAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacggc                                   >  7:168334/1‑148 (MQ=255)                                                                                                                  aCCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacggcaacgg                              <  2:55404/149‑1 (MQ=255)                                                                                                                    cgcgCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTtcgtc                                                         >  7:313082/1‑120 (MQ=255)                                                                                                                    cgcgCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTtcgtc                                                         <  8:313082/120‑1 (MQ=255)                                                                                                                    cgcgCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacgg                                    <  2:328573/141‑1 (MQ=255)                                                                                                                    cgcgCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacgg                                    >  1:328573/1‑141 (MQ=255)                                                                                                                       gcCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGc                         <  3:98120/149‑1 (MQ=255)                                                                                                                            ccTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGt                                                                            <  2:314290/93‑1 (MQ=255)                                                                                                                            ccTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGt                                                                            >  1:314290/1‑93 (MQ=255)                                                                                                                             cTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCat                   <  4:281203/149‑1 (MQ=255)                                                                                                                                   cGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGa                                                       <  4:323393/107‑1 (MQ=255)                                                                                                                                   cGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGa                                                       >  3:323393/1‑107 (MQ=255)                                                                                                                                   cGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGc             >  1:279376/1‑149 (MQ=255)                                                                                                                                       gCCAACTGG‑TCCTTGTCGCCAAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGaaa         <  1:1413/149‑1 (MQ=255)                                                                                                                                              gg‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCcgc  >  5:218628/1‑149 (MQ=255)                                                                                                                                               g‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCGGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCTAAAGTGCcgc  >  2:258265/1‑148 (MQ=255)                                                                                                                                               g‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCcgc  >  7:239606/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CGCCGGCCTTAAGGCCACTGCCGGCCAGCGACTCGCCACTGACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGG‑TCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGC  >  NC_002947/5298907‑5299196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.