New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5299051 =48 (0.910)3 (0.060) 3/244 NT 5.9% coding (1051/2076 nt) recD multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease
?NC_002947 5299093 = 49 (0.970)coding (1009/2076 nt) recD multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease

ACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCGGGCGGCTGCCGAGCAGGCGATGCACGGTGCTGAC  >  NC_002947/5298948‑5299237
                                                                                                                                                  |                                                                                                                                                
gcggcactttcgccatcatgctggcaacccgttgccgttggatgtgctggtggtcgacgaagcgtcgatgatcgacctggaaatgatggccaacctgctcgatgCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCa                                                                                                                                                 >  7:300098‑M1/105‑148 (MQ=255)
  ctgctgAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATc                                                                                                                                               >  3:135204/1‑147 (MQ=255)
       gAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAgg                                                                                                                                        >  3:125036/1‑149 (MQ=255)
         aGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGtt                                                                                                                                      <  4:135204/149‑1 (MQ=255)
           ccACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTgg                                                                                                                                    >  4:83686/1‑149 (MQ=255)
            cACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGc                                                                                                                                   <  5:57447/149‑1 (MQ=255)
             aCGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGcc                                                                                                                                  <  3:83686/149‑1 (MQ=255)
             aCGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGc                                                                                                                                   >  4:251215/1‑148 (MQ=255)
                    aGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCAttt                                                                                                                           >  3:281203/1‑149 (MQ=255)
                        gCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCa                                                                                                                        <  3:251215/148‑1 (MQ=255)
                               aGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGatc                                                                                                                <  3:54323/149‑1 (MQ=255)
                                gTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGatca                                                                                                               >  1:55404/1‑149 (MQ=255)
                                 tAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCcatca                                                                                                                              <  6:265853/133‑1 (MQ=255)
                                 tAAAAGCCATCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCcatca                                                                                                                              >  5:265853/1‑133 (MQ=255)
                                     aGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGAc                                                                                                          <  1:249925/149‑1 (MQ=255)
                                             tcAGCATCCCGGCACAGGTCACCCAGCACCGCGCCCGCCTCGACCCAGGCCAACTGGAGCCTTGTCGCCCAGCAGCACCAGACCCGCCCGCGGCGGCAAGGCATCCAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACCCTtcgt                                                                                                   >  1:96829/1‑149 (MQ=255)
                                              cAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCcatc                                                                                                                               <  5:157688/119‑1 (MQ=255)
                                              cAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCcatc                                                                                                                               >  6:157688/1‑119 (MQ=255)
                                               aGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTtcgtc                                                                                                  <  4:125036/147‑1 (MQ=255)
                                               aGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGa                                                                                                >  6:220858/1‑149 (MQ=255)
                                                   tCCCGGCTCAGGTCACGCAGCACCGCGCCGGCGTCGACCGAGGCCAAGTGGTCCTTGTCGCCCAGGAGCACCAGACGCGCCGGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATGATCGACGCTTCGTCGaccac                                                                                            <  2:96829/149‑1 (MQ=255)
                                                        gCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTAGATCATCGACGCTTCGTCGACCACCAGc                                                                                        >  4:98120/1‑148 (MQ=255)
                                                              gTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATc                                                                                   <  5:221089/147‑1 (MQ=255)
                                                              gTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATc                                                                                   >  6:221089/1‑147 (MQ=255)
                                                                    cAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacggc                                                                            >  7:168334/1‑148 (MQ=255)
                                                                        aCCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacggcaacgg                                                                       <  2:55404/149‑1 (MQ=255)
                                                                          cgcgCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTtcgtc                                                                                                  <  8:313082/120‑1 (MQ=255)
                                                                          cgcgCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTtcgtc                                                                                                  >  7:313082/1‑120 (MQ=255)
                                                                          cgcgCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacgg                                                                             >  1:328573/1‑141 (MQ=255)
                                                                          cgcgCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacgg                                                                             <  2:328573/141‑1 (MQ=255)
                                                                             gcCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGc                                                                  <  3:98120/149‑1 (MQ=255)
                                                                                  ccTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGt                                                                                                                     <  2:314290/93‑1 (MQ=255)
                                                                                  ccTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGt                                                                                                                     >  1:314290/1‑93 (MQ=255)
                                                                                   cTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCat                                                            <  4:281203/149‑1 (MQ=255)
                                                                                         cGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGa                                                                                                >  3:323393/1‑107 (MQ=255)
                                                                                         cGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGa                                                                                                <  4:323393/107‑1 (MQ=255)
                                                                                         cGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGc                                                      >  1:279376/1‑149 (MQ=255)
                                                                                             gCCAACTGGTCCTTGTCGCCAAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGaaa                                                  <  1:1413/149‑1 (MQ=255)
                                                                                                    ggTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCcgc                                           >  5:218628/1‑149 (MQ=255)
                                                                                                     gTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCGGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCTAAAGTGCcgc                                           >  2:258265/1‑148 (MQ=255)
                                                                                                     gTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCcgc                                           >  7:239606/1‑148 (MQ=255)
                                                                                                      tgccttgccgccgcgggcgcgtctggtgctgctgggcgacaaggCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCcgc                                           >  7:300098‑M2/45‑148 (MQ=255)
                                                                                                        ccttgccgccgcgggcgcgtctggtgctgctgggcgacaaggCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGtt                                                                    <  7:112402‑M2/79‑1 (MQ=255)
                                                                                                        ccttgccgccgcgggcgcgtctggtgctgctgggcgacaaggCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGtt                                                                    >  8:112402‑M2/43‑121 (MQ=255)
                                                                                                         CTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAg                                                                                         <  5:230735‑M1/99‑1 (MQ=255)
                                                                                                         CTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAg                                                                                         >  6:230735‑M1/1‑99 (MQ=255)
                                                                                                          TTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGACAGCATGATGGCGAAAGTGCCGCGAGcc                                      <  5:208457‑M1/149‑1 (MQ=255)
                                                                                                            GTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGcc                                      >  6:218628‑M1/1‑147 (MQ=255)
                                                                                                             tCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCgg                                   >  4:306011/1‑149 (MQ=255)
                                                                                                             tCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCgg                                   >  1:163501/1‑149 (MQ=255)
                                                                                                                 ccAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCGggcgg                               >  5:134316/1‑149 (MQ=255)
                                                                                                                          ccAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacg                                                                              <  4:60485/93‑1 (MQ=255)
                                                                                                                          ccAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCcaacg                                                                              >  3:60485/1‑93 (MQ=255)
                                                                                                                          ccAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCGGGCGGCTGCCGAGc                      <  5:220858/149‑1 (MQ=255)
                                                                                                                            aGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCGGGCGGCTGCCGAGCAg                    >  7:26480/1‑149 (MQ=255)
                                                                                                                            aGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCGGGCGGCTGCCGAGCAg                    <  3:306011/149‑1 (MQ=255)
                                                                                                                                gcgcCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCGGGCGGCTGCCGAGCAGGCGa                <  2:163501/149‑1 (MQ=255)
                                                                                                                                      gcggcgGCAAGGCATCGAGCAGGTTGGCCATCATTTCCGGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCCACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCGGGCGGCTGCCGAGCAGGCGATGCACg          <  1:258265/149‑1 (MQ=255)
                                                                                                                                              aaggCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCGGGCGGCTGCCGAGCAGGCGATGCACGGTGCTGAc  >  7:202760‑M2/5‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
ACCTGCTGAAGCCACGCTGCAGTCGCCGGCGAGTAAAAGCCCTCCTCAGCATCCCGGCACAGGTCACCCAGCACCGCGCCGGCCTCGACCGAGGCCAACTGGTCCTTGTCGCCCAGCAGCACCAGACGCGCCCGCGGCGGCAAGGCATCGAGCAGGTTGGCCATCATTTCCAGGTCGATCATCGACGCTTCGTCGACCACCAGCACATCCAACGGCAACGGGTTGCCAGCATGATGGCGAAAGTGCCGCGAGCCCGGGCGGCTGCCGAGCAGGCGATGCACGGTGCTGAC  >  NC_002947/5298948‑5299237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.