New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5315699 =	41 (0.780)	4 (0.080)	4/244	NT	9.3%	coding (234/852 nt)	PP_4677	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
	?	NC_002947	5315752 =	39 (0.770)					coding (181/852 nt)	PP_4677	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase

GGGCCACGCCGAAGGCGACCATATCCGACAGCGAGTCATACTCGGCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGT  >  NC_002947/5315551‑5315847                                                                                                                                                     |                                                                                                                                                     gggCCACGCCGAAGGCGACCATATCCGACAGCGAGTCATACTCGGCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTg                                                                                                                                                      <  6:135391/149‑1 (MQ=255)   cgacgccgaaagcctgctacctgtcgatgagcacgttgaagaagggcatgacgccgaaggccgcaaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGct                                                                                                                                                    <  5:270532‑M1/3‑1 (MQ=255)               cctgctacctgtcgatgagcacgttgaagaagggcatgacgccgaaggccgcaaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGCTCGCCTCGCGCgg                                                                                                                                        <  6:179536‑M1/15‑1 (MQ=255)                    tacctgtcgatgagcacgttgaagaagggcatgacgccgaaggccgcaaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGc                                                                                                                                                     <  3:321407‑M1/2‑1 (MQ=255)                    tacctgtcgatgagcacgttgaagaagggcatgacgccgaaggccgcaaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGc                                                                                                                                                     >  4:321407‑M1/130‑131 (MQ=255)                      tatCCGACAGCGAGTCATACTCGGCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGc                                                                                                                                                     >  3:216845/1‑129 (MQ=255)                        tCCGACAGCGAGTCATACTCGGCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGc                                                                                                                               >  5:354614/1‑149 (MQ=255)                              aGCGAGTCATACTCGGCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAg                                                                                                                         <  4:266555/149‑1 (MQ=255)                                    tCATACTCGGCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGct                                                                                                                   >  3:322375/1‑149 (MQ=255)                                      aTACTCGGCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGctct                                                                                                                 >  8:215495/1‑149 (MQ=255)                                         cTCGGCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCtgtg                                                                                                              >  1:330276/1‑149 (MQ=255)                                            ggCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTgcgc                                                                                                           >  8:247293/1‑149 (MQ=255)                                               aCCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGcc                                                                                                                                  >  2:199955/1‑123 (MQ=255)                                               aCCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGcc                                                                                                                                  <  1:199955/123‑1 (MQ=255)                                                ccGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCAt                                                                                                       <  7:215495/149‑1 (MQ=255)                                                       gccgaaggccgcaaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCt                                                                                                 <  5:202883‑M1/54‑1 (MQ=255)                                                           aaggccgcaaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCtgatga                                                                                            >  6:202883‑M1/91‑149 (MQ=255)                                                              ggTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGatgatg                                                                                          <  2:330276/148‑1 (MQ=255)                                                               gTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATgg                                                                                         >  6:324954/1‑148 (MQ=255)                                                                tATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGaa                                                                                       <  5:324954/149‑1 (MQ=255)                                                                   aaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAg                                                                                    >  5:179536‑M1/83‑149 (MQ=255)                                                                     gTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGa                                                                                   >  4:166411/1‑148 (MQ=255)                                                                        aTGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGct                                                                                                                   >  6:242341/1‑113 (MQ=255)                                                                        aTGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGct                                                                                                                   <  5:242341/113‑1 (MQ=255)                                                                            gcgcAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGc                                                                            <  1:223097/148‑1 (MQ=255)                                                                            gcgcAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGc                                                                            >  2:223097/1‑148 (MQ=255)                                                                                aaCGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGTCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCaaa                                                                         >  6:94380/1‑147 (MQ=255)                                                                                aaCGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACa                                                                       <  7:255975/149‑1 (MQ=255)                                                                                    cgGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGtt                                                                   <  7:247293/149‑1 (MQ=255)                                                                                     ggCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTgc                                                                                                             >  5:107476/1‑106 (MQ=255)                                                                                     ggCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTgc                                                                                                             <  6:107476/106‑1 (MQ=255)                                                                                             aGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGCCAACCTGTTTGCCggtttc                                                          <  6:354614/149‑4 (MQ=255)                                                                                                       gCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTg                                                >  6:196556/1‑149 (MQ=255)                                                                                                           cATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGtt                                                                   <  8:222086/126‑1 (MQ=255)                                                                                                           cATGGCCACGAAGATGGCGATAGCGGAAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGtt                                                                   >  7:222086/1‑126 (MQ=255)                                                                                                            aTGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCaa                                           <  5:196556/149‑1 (MQ=255)                                                                                                            aTGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCaa                                           <  6:193189/149‑1 (MQ=255)                                                                                                                 cACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGTCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGt                                      <  5:94380/149‑1 (MQ=255)                                                                                                                    gAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAgg                                       >  3:218074/1‑145 (MQ=255)                                                                                                                       gATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATg                                 >  1:236507/1‑148 (MQ=255)                                                                                                                       gATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATg                                 <  2:236507/148‑1 (MQ=255)                                                                                                                         tGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCcg                              >  4:20302/1‑149 (MQ=255)                                                                                                                          ggCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCggtgg                                                           >  2:275487/1‑119 (MQ=255)                                                                                                                                  cGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCg                                                               <  3:332748/107‑1 (MQ=255)                                                                                                                                  cGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCg                                                               >  4:332748/1‑107 (MQ=255)                                                                                                                                   ggCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGt                                      <  4:91081/131‑1 (MQ=255)                                                                                                                                   ggCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGt                                      >  3:91081/1‑131 (MQ=255)                                                                                                                                      aaaaGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCt                 >  6:270532/1‑149 (MQ=255)                                                                                                                                      aaaaGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGACGCGGTGGCGCACCt                 >  8:199493/1‑149 (MQ=255)                                                                                                                                           cGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCgg            >  5:166081/1‑149 (MQ=255)                                                                                                                                                   ttGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGc    >  3:48532/1‑149 (MQ=255)                                                                                                                                                     GCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGt  <  8:203538‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GGGCCACGCCGAAGGCGACCATATCCGACAGCGAGTCATACTCGGCACCGAAGGCACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGT  >  NC_002947/5315551‑5315847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.