New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5315699 =	41 (0.780)	4 (0.080)	4/244	NT	9.3%	coding (234/852 nt)	PP_4677	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase
	?	NC_002947	5315752 =	39 (0.770)					coding (181/852 nt)	PP_4677	CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase

CACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGACAGGTAGCAGGCTTTCGGCGTCG  >  NC_002947/5315605‑5315897                                                                                                                                                    |                                                                                                                                                  gccgaaggccgcaaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCt                                                                                                                                                   <  5:202883‑M1/54‑1 (MQ=255)     aaggccgcaaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCtgatga                                                                                                                                              >  6:202883‑M1/91‑149 (MQ=255)        ggTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGatgatg                                                                                                                                            <  2:330276/148‑1 (MQ=255)         gTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATgg                                                                                                                                           >  6:324954/1‑148 (MQ=255)          tATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGaa                                                                                                                                         <  5:324954/149‑1 (MQ=255)             aaggtgcgccaccgcggcatctacctgttgcccaacctgtttaccaccgccaacctgtttgccggtttctattccatcatcaGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAg                                                                                                                                      >  5:179536‑M1/83‑149 (MQ=255)               gTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGa                                                                                                                                     >  4:166411/1‑148 (MQ=255)                      gcgcAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGc                                                                                                                              <  1:223097/148‑1 (MQ=255)                      gcgcAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGc                                                                                                                              >  2:223097/1‑148 (MQ=255)                          aaCGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGTCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCaaa                                                                                                                           >  6:94380/1‑147 (MQ=255)                          aaCGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACa                                                                                                                         <  7:255975/149‑1 (MQ=255)                              cgGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGtt                                                                                                                     <  7:247293/149‑1 (MQ=255)                                       aGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGCCAACCTGTTTGCCggtttc                                                                                                            <  6:354614/149‑4 (MQ=255)                                                 gCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTg                                                                                                  >  6:196556/1‑149 (MQ=255)                                                     cATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGtt                                                                                                                     <  8:222086/126‑1 (MQ=255)                                                     cATGGCCACGAAGATGGCGATAGCGGAAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGtt                                                                                                                     >  7:222086/1‑126 (MQ=255)                                                      aTGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCaa                                                                                             <  6:193189/149‑1 (MQ=255)                                                      aTGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCaa                                                                                             <  5:196556/149‑1 (MQ=255)                                                           cACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGTCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGt                                                                                        <  5:94380/149‑1 (MQ=255)                                                              gAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAgg                                                                                         >  3:218074/1‑145 (MQ=255)                                                                 gATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATg                                                                                   >  1:236507/1‑148 (MQ=255)                                                                 gATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATg                                                                                   <  2:236507/148‑1 (MQ=255)                                                                   tGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCcg                                                                                >  4:20302/1‑149 (MQ=255)                                                                    ggCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCggtgg                                                                                                             >  2:275487/1‑119 (MQ=255)                                                                            cGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCg                                                                                                                 >  4:332748/1‑107 (MQ=255)                                                                            cGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCg                                                                                                                 <  3:332748/107‑1 (MQ=255)                                                                             ggCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGt                                                                                        <  4:91081/131‑1 (MQ=255)                                                                             ggCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGt                                                                                        >  3:91081/1‑131 (MQ=255)                                                                                aaaaGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCt                                                                   >  6:270532/1‑149 (MQ=255)                                                                                aaaaGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGACGCGGTGGCGCACCt                                                                   >  8:199493/1‑149 (MQ=255)                                                                                 ctattccatcatcagctcgatgagcgcacagagcgccctgagtgccggcgacccgcgcgaggcgagcTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCtt                                                                  >  5:179536‑M2/68‑149 (MQ=255)                                                                                     cGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCgg                                                              >  5:166081/1‑149 (MQ=255)                                                                                         tcatcagctcgatgagcgcacagagcgccctgagtgccggcgacccgcgcgaggcgagcTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCtt                                                          >  6:202883‑M2/60‑149 (MQ=255)                                                                                             ttGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGc                                                      >  3:48532/1‑149 (MQ=255)                                                                                              agctcgatgagcgcacagagcgccctgagtgccggcgacccgcgcgaggcgagcTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGc                                                      <  5:202883‑M2/94‑1 (MQ=255)                                                                                               GCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGt                                                    <  8:203538‑M1/149‑1 (MQ=255)                                                                                                CTCGCCTCGCGCGGGTCGCCGCCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGt                                                    <  5:234825‑M1/148‑1 (MQ=255)                                                                                                 TCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCa                                                  <  4:106715‑M1/149‑1 (MQ=255)                                                                                                    cctcgcGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGc                                               <  6:166081/149‑1 (MQ=255)                                                                                                     ctcgcGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGcc                                              <  7:203538/149‑1 (MQ=255)                                                                                                        gcgcgGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGccc                                             <  4:218074/147‑1 (MQ=255)                                                                                                         cgcgGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCcttc                                          <  4:48532/149‑1 (MQ=255)                                                                                                            gggTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCttcttc                                       <  3:20302/149‑1 (MQ=255)                                                                                                                  ccGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTTTTCAACg                                   <  4:51271/147‑1 (MQ=255)                                                                                                                  ccGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTTTTCAACGta                                 >  3:51271/1‑148 (MQ=255)                                                                                                                           aGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGa                         <  4:322375/148‑1 (MQ=255)                                                                                                                            ggtcgcTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGAGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTTGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGACa                       <  7:199493/146‑1 (MQ=255)                                                                                                                                  tctGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGACAGGTAg                  >  3:191251/1‑148 (MQ=255)                                                                                                                                     ccgcgcgaggcgagcTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGACAGGTAGCAgg              <  6:179536‑M2/134‑1 (MQ=255)                                                                                                                                             aTCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGACAGGTAGCAGGCTTTCggt      <  4:191251/149‑2 (MQ=255)                                                                                                                                                 agcTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGACAGGTAGCAGGCTTTCGGCGTCg  <  5:270532‑M2/146‑1 (MQ=255)                                                                                                                                                  gcTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGACAGGTa                   <  3:321407‑M2/129‑1 (MQ=255)                                                                                                                                                  gcTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGACAGGTa                   >  4:321407‑M2/3‑131 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CACTCTGGGTATTGGTCATGCGCGCAACGCGGCCGTCCAGGCCGTCGAGCACCATGGCCACGAAGATGGCGATAGCGGCAAAAGCGAAGTACTTGCTCGCCTCGCGCGGGTCGCCGGCACTCAGGGCGCTCTGTGCGCTCATCGAGCTGATGATGGAATAGAAACCGGCAAACAGGTTGGCGGTGGTAAACAGGTTGGGCAACAGGTAGATGCCGCGGTGGCGCACCTTGCGGCCTTCGGCGTCATGCCCTTCTTCAACGTGCTCATCGACAGGTAGCAGGCTTTCGGCGTCG  >  NC_002947/5315605‑5315897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.