New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5413023 =	44 (0.830)	5 (0.100)	5/238	NT	12.3%	coding (1147/2394 nt)	PP_4755	ferrichrome‑iron receptor
	?	NC_002947	5413089 =	30 (0.610)					coding (1081/2394 nt)	PP_4755	ferrichrome‑iron receptor

GCGTTGTCGCTCAGGTAGACATAGCCGAAGTCATCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAGGTGAAGTCGGTCGGCGCCCAGGTCAGGCCGCCCATCA  >  NC_002947/5412878‑5413163                                                                                                                                                  |                                                                                                                                             ggccgcttcacggccaagatgcagaacagcgaccgcgagtacgaccattcgcaggacgataaccgcttcgtgatgggcggcctgacctgggcgccgaccgacttcacctcggccacggtggtgctggattacctgaagaccaacaGCTc                                                                                                                                           <  8:143870‑M1/4‑1 (MQ=255)    cgcttcacggccaagatgcagaacagcgaccgcgagtacgaccattcgcaggacgataaccgcttcgtgatgggcggcctgacctgggcgccgaccgacttcacctcggccacggtggtgctggattacctgaagaccaacaGCTCGcc                                                                                                                                        >  7:240112‑M1/143‑149 (MQ=255)          cTCAGGTAGACATAGCCGAAGTCATCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGaa                                                                                                                                  <  8:314630/149‑1 (MQ=255)           cggccaagatgcagaacagcgaccgcgagtacgaccattcgcaggacgataaccgcttcgtgatgggcggcctgacctgggcgccgaccgacttcacctcggccacggtggtgctggattacctgaagaccaacaGCTCGCCGTAGAAg                                                                                                                                 <  5:331290‑M1/14‑1 (MQ=255)             gccaagatgcagaacagcgaccgcgagtacgaccattcgcaggacgataaccgcttcgtgatgggcggcctgacctgggcgccgaccgacttcacctcggccacggtggtgctggattacctgaagaccaacaGCTCGCCGTAGAAGTc                                                                                                                               <  8:308456‑M1/16‑1 (MQ=255)              ggTAGACATAGCCGAAGTCATCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCg                                                                                                                              <  2:134056/149‑1 (MQ=255)                       aGCCGAAGTCATCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCg                                                                                                                     >  5:70601/1‑149 (MQ=255)                         ccGAAGTCATCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTa                                                                                                                   >  5:52896/1‑149 (MQ=255)                         ccGAAGTCATCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGCAACGCCGTAGATGACGCTCCCGTCGTa                                                                                                                   >  5:94638/1‑149 (MQ=255)                          cGAAGTCATCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTAc                                                                                                                  <  6:70601/149‑1 (MQ=255)                              gTCATCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCt                                                                                                              >  1:80508/1‑149 (MQ=255)                                 aTCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTAcccc                                                                                                               <  4:326980/145‑1 (MQ=255)                                 aTCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTAcccc                                                                                                               >  3:326980/1‑145 (MQ=255)                                 aTCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGt                                                                                                           <  8:305756/149‑1 (MQ=255)                                    ggTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTAcccc                                                                                                               <  2:74421/142‑1 (MQ=255)                                    ggTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTAcccc                                                                                                               >  1:74421/1‑142 (MQ=255)                                      tCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGc                                                                                                      <  3:108067/149‑1 (MQ=255)                                      tCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGc                                                                                                      <  4:95883/149‑1 (MQ=255)                                         gCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCggg                                                                                                   <  8:258145/149‑1 (MQ=255)                                               tGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTc                                                                                                                      <  2:20332/124‑1 (MQ=255)                                               tGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTc                                                                                                                      >  1:20332/1‑124 (MQ=255)                                                gTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCAc                                                                                            >  8:314751/1‑149 (MQ=255)                                                            tctggggaGGGTGAATCTGTTGTCGAAGTTGTGGGTTATTTTTGCGCTCATGCTGGTTCGCTTGTAATCGTTGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGc                                                                                 <  6:94638/141‑1 (MQ=255)                                                            gctgcGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGc                                                                                 >  5:103867/1‑148 (MQ=255)                                                              tgcGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAg                                                                              >  4:81379/1‑149 (MQ=255)                                                               ccgcttcgtgatgggcggcctgacctgggcgccgaccgacttcacctcggccacggtggtgctggattacctgaagaccaacaGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGc                                                                             >  7:308456‑M1/84‑149 (MQ=255)                                                                cgcttcgtgatgggcggcctgacctgggcgccgaccgacttcacctcggccacggtggtgctggattacctgaagaccaacaGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCt                                                                            <  6:8135‑M1/67‑1 (MQ=255)                                                                   aGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGtt                                                                         >  7:143870/1‑149 (MQ=255)                                                                    gggTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTg                                                                        >  1:45092/1‑149 (MQ=255)                                                                     cgtgatgggcggcctgacctgggcgccgaccgacttcacctcggccacggtggtgctggattacctgaagaccaacaGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTg                                                                        >  5:8135‑M1/78‑148 (MQ=255)                                                                          aGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCtt                                                                   <  3:134873/148‑1 (MQ=255)                                                                          aGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCtt                                                                   >  4:134873/1‑148 (MQ=255)                                                                             cGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAgg                                                               <  6:103867/149‑1 (MQ=255)                                                                                    gAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCa                                                        <  7:314751/149‑1 (MQ=255)                                                                                               tAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTg                                             >  8:30733/1‑149 (MQ=255)                                                                                                    ttGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTa                                                             <  6:327897/128‑1 (MQ=255)                                                                                                    ttGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTa                                                             >  5:327897/1‑128 (MQ=255)                                                                                                    ttGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGa                                        <  1:138700/149‑1 (MQ=255)                                                                                                      gCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAg                                       <  3:81379/148‑1 (MQ=255)                                                                                                       ccGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAgg                                      <  2:45092/148‑1 (MQ=255)                                                                                                                  ggTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAGGTg                                    <  3:66112/139‑1 (MQ=255)                                                                                                                  ggTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAGGTg                                    >  4:66112/1‑139 (MQ=255)                                                                                                                          cGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAGGTGAAGTCGGTCGGCGCCCAg                  >  6:250457/1‑149 (MQ=255)                                                                                                                            aCATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAGGTGAAGTCGGTCGGCGCCCAGGt                <  6:332237/149‑1 (MQ=255)                                                                                                                                 gTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAGGTGAAGTCGGTCGGCGCCCAGGTCAGgc           >  1:211109/1‑149 (MQ=255)                                                                                                                                  tGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGcac                                                    >  2:314841/1‑107 (MQ=255)                                                                                                                                  tGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGcac                                                    <  1:314841/107‑1 (MQ=255)                                                                                                                                    gAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTc                                                                  >  4:314412/1‑91 (MQ=255)                                                                                                                                    gAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTc                                                                  <  3:314412/91‑1 (MQ=255)                                                                                                                                      aGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAGGTGAAGTCGGTCGGCGCCCAGGTCAGGCCGccc      <  2:211109/149‑1 (MQ=255)                                                                                                                                           tAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAGGTGAAGTCGGTCGGCGCCCAGGTCAGGCCGCCCATCa  <  7:30733/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                             GCGTTGTCGCTCAGGTAGACATAGCCGAAGTCATCGGTCAGCTCGCTGTAGCGCAGGTTGCTGCGCAGGGTGAAGCCGTTGTCGAAGTCGTGGGTAATGTTGCCGCTCAGGCTGGTGCGCTCGACATCGTGGAAGTTGTAGCCGGGCTCGCCGTAGAAGTCGCTGCGGTCGTACCCCTTGTCCAGCGGGTAGCCACCGCTGTTCGGCGAGCTGTTGGTCTTCAGGTAATCCAGCACCACCGTGGCCGAGGTGAAGTCGGTCGGCGCCCAGGTCAGGCCGCCCATCA  >  NC_002947/5412878‑5413163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.