New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5940728 =	48 (0.910)	4 (0.080)	4/248	NT	7.2%	coding (567/1113 nt)	yhhJ	translation‑like protein
	?	NC_002947	5940769 =	57 (1.110)					coding (608/1113 nt)	yhhJ	translation‑like protein

GAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAGCAAAGCCCGGTGCTGATCAACCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCTGGTGGTGGTGATCTGCACCTGGATTTCGTT  >  NC_002947/5940582‑5940874                                                                                                                                                   |                                                                                                                                                   agacagcggcacgcccagtgcacctttgacgactaccaccaacgaaatccaggtgcagatcaccaccaccagcgcgttgctgccgatcttggccagcatgatctccagcgcggtcagcggcagcaccagcaggtggtcgagggtgcCAt                                                                                                                                                  <  2:326493‑M1/3‑1 (MQ=255)                        ctttgacgactaccaccaacgaaatccaggtgcagatcaccaccaccagcgcgttgctgccgatcttggccagcatgatctccagcgcggtcagcggcagcaccagcaggtggtcgagggtgcCATCCTCACTGGCACCGCGCtgctgc                                                                                                                           <  5:326962‑M1/26‑1 (MQ=255)                           gcGTGGTAACGAGCAAAGCCCGGTGCTGATCAACCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGcgcg                                                                                                                        >  6:28910/1‑149 (MQ=255)                                gTAACGAGCAAAGCCCGGTGCTGATCAACCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGt                                                                                                                   <  1:242999/149‑1 (MQ=255)                                   aCGAGCAAAGCCCGGTGCTGATCAACCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAg                                                                                                                <  8:130043/149‑1 (MQ=255)                                   aCGAGCAAAGCCCGGTGCTGATCAACCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAg                                                                                                                <  2:300256/149‑1 (MQ=255)                                     gAGCAAAGCCCGGTGCTGATCAACCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGGTGGTTTATGGCCGTGATCCAGATCGTCAACAACATTACCAACATGGCGATCTTCCTAAATGGCACCGCGATGATGCGCGAGCGTCAgaa                                                                                                              >  2:80384/1‑147 (MQ=255)                                           cgaaatccaggtgcagatcaccaccaccagcgcgttgctgccgatcttggccagcatgatctccagcgcggtcagcggcagcaccagcaggtggtcgagggtgcCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCAc                                                                                                        >  6:326962‑M1/105‑149 (MQ=255)                                                 ccaggtgcagatcaccaccaccagcgcgttgctgccgatcttggccagcatgatctccagcgcggtcagcggcagcaccagcaggtggtcgagggtgcc                                                                                                                                                    <  8:251253‑M1/1‑1 (MQ=255)                                                      gATCAACCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGatcat                                                                                                                                                  >  2:57686/1‑96 (MQ=255)                                                      gATCAACCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGAACCAGATCGTCAACAACATTACCATCCTGGCGatcat                                                                                                                                                  <  1:57686/96‑1 (MQ=255)                                                       aTCAACCCCAACGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACct                                                                                            >  8:246712/1‑149 (MQ=255)                                                          aaCCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGt                                                                                                                   <  6:327407/123‑1 (MQ=255)                                                          aaCCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGt                                                                                                                   >  5:327407/1‑123 (MQ=255)                                                           aCCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATg                                                                                                            >  8:234185/1‑129 (MQ=255)                                                             cccAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGc                                                                                                                     <  8:66497/118‑1 (MQ=255)                                                             cccAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGc                                                                                                                     >  7:66497/1‑118 (MQ=255)                                                             cccAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACctgctg                                                                                        >  8:286165/1‑147 (MQ=255)                                                             cccAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACctgctg                                                                                        <  7:286165/147‑1 (MQ=255)                                                              ccAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGtg                                                                                     >  8:216223/1‑149 (MQ=255)                                                               cAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGtgc                                                                                    >  8:91719/1‑149 (MQ=255)                                                                caccaccagcgcgttgctgccgatcttggccagcatgatctccagcgcggtcagcggcagcaccagcaggtggtcgagggtgcCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATg                                                                                                            >  7:226246‑M1/84‑124 (MQ=255)                                                                caccaccagcgcgttgctgccgatcttggccagcatgatctccagcgcggtcagcggcagcaccagcaggtggtcgagggtgcCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATg                                                                                                            <  8:226246‑M1/41‑1 (MQ=255)                                                                  ggCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGtgctgc                                                                                 <  5:244671/149‑1 (MQ=255)                                                                       tGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCt                                                                             >  4:208111/1‑148 (MQ=255)                                                                         ttCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCt                                                                                                     >  6:124594/1‑122 (MQ=255)                                                                         ttCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCt                                                                                                     <  5:124594/122‑1 (MQ=255)                                                                         ttCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGa                                                                           <  5:28910/148‑1 (MQ=255)                                                                              ccccAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACctgctg                                                                                        <  7:153148/130‑1 (MQ=255)                                                                              ccccAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACctgctg                                                                                        >  8:153148/1‑130 (MQ=255)                                                                               cccAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCt                                                                    >  1:176667/1‑149 (MQ=255)                                                                                ccAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCTATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTg                                                                   <  8:47191/149‑1 (MQ=255)                                                                                ccAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTg                                                                   <  5:264994/149‑1 (MQ=255)                                                                                ccAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCAACGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTg                                                                   >  8:124571/1‑149 (MQ=255)                                                                                 cAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTg                                                                   >  5:191416/1‑148 (MQ=255)                                                                                 cAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTg                                                                   >  3:93503/1‑148 (MQ=255)                                                                                        gAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCTCCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCAt                                                           <  7:246712/149‑1 (MQ=255)                                                                                        gAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCAt                                                           <  7:91719/149‑1 (MQ=255)                                                                                          ggggggCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGc                                                         <  7:216223/149‑1 (MQ=255)                                                                                             gggCTGGTTTCTGGCCGTGATCCAGATCGTCTACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGGTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTgg                                                      <  3:208111/149‑1 (MQ=255)                                                                                                      tCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATc                                              <  6:191416/148‑1 (MQ=255)                                                                                                          gCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCgg                                            <  2:176667/146‑1 (MQ=255)                                                                                                               gATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAAcg                                    >  1:168095/1‑149 (MQ=255)                                                                                                                      aTCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGgca                                          <  5:188867/136‑1 (MQ=255)                                                                                                                      aTCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGgca                                          >  6:188867/1‑136 (MQ=255)                                                                                                                          tCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCtggtggtg                         >  3:103587/1‑149 (MQ=255)                                                                                                                          tCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCtggtggtg                         <  2:168095/149‑1 (MQ=255)                                                                                                                             acaacaTTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCTggtggtggt                       >  6:104826/1‑148 (MQ=255)                                                                                                                               aacaTTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCa                                                            >  7:278733/1‑109 (MQ=255)                                                                                                                               aacaTTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCa                                                            <  8:278733/109‑1 (MQ=255)                                                                                                                                 caTTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATc                                                             >  6:181053/1‑106 (MQ=255)                                                                                                                                 caTTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATc                                                             <  5:181053/106‑1 (MQ=255)                                                                                                                                      ccATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCtggtg                            >  7:63843/1‑134 (MQ=255)                                                                                                                                      ccATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCtggtg                            <  8:63843/134‑1 (MQ=255)                                                                                                                                         tCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTg                                                                   <  2:35570/92‑1 (MQ=255)                                                                                                                                         tCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTg                                                                   >  1:35570/1‑92 (MQ=255)                                                                                                                                              gCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCTGGTGGTGGTGATCTGCACCTGGATTTc     <  1:80384/149‑1 (MQ=255)                                                                                                                                                gATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCTGGTGGTGGTGATCTGCACCTGGATTTCGt   >  8:2858/1‑149 (MQ=255)                                                                                                                                                gATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCTGGTGGTGGTGATCTGCACCTGGATTTCGt   >  1:326493/1‑149 (MQ=255)                                                                                                                                                 atcatcCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCa                                                            >  5:147763/1‑91 (MQ=255)                                                                                                                                                 atcatcCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCa                                                            <  6:147763/91‑1 (MQ=255)                                                                                                                                                 atcatcCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCTGGTGGTGGTGATCTGCACCTGGATTTCGtt  <  5:104826/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GAGCGCGAGCTGCTCGACTACAGCCAGCGTGGTAACGAGCAAAGCCCGGTGCTGATCAACCCCAAGGCGCTGTTCAACCCCAACCTGGAGGGGGGCTGGTTTCTGGCCGTGATCCAGATCGTCAACAACATTACCATCCTGGCGATCATCCTCACTGGCACCGCGCTGCTGCGCGAGCGTGAGCATGGCACCCTCGACCACCTGCTGGTGCTGCCGCTGACCGCGCTGGAGATCATGCTGGCCAAGATCGGCAGCAACGCGCTGGTGGTGGTGATCTGCACCTGGATTTCGTT  >  NC_002947/5940582‑5940874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.