New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6045929 =	44 (0.830)	3 (0.060)	3/244	NT	6.1%	coding (182/768 nt)	PP_5298	glutamine amidotransferase
	?	NC_002947	6045977 =	50 (0.990)					coding (134/768 nt)	PP_5298	glutamine amidotransferase

ACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCT  >  NC_002947/6045797‑6046077                                                                                                                                     |                                                                                                                                                     aCGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCcag                                                                                                                                      >  7:175928/1‑149 (MQ=255)           ctgcctgcAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGc                                                                                                                            <  8:175928/149‑1 (MQ=255)                tgcAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGcc                                                                                                                                                     >  1:103715/1‑119 (MQ=255)                tgcAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGcc                                                                                                                                                     <  2:103715/119‑1 (MQ=255)                atctaCAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTc                                                                                                                       <  7:249421/145‑1 (MQ=255)                    aCAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTg                                                                                                                   >  5:205280/1‑149 (MQ=255)                     cAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTc                                                                                                                       >  8:249421/1‑144 (MQ=255)                              ggTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGa                                                                                                                                           >  6:270811/1‑115 (MQ=255)                                tCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGc                                                                                                                            <  1:145936/128‑1 (MQ=255)                                tCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGc                                                                                                                            >  2:145936/1‑128 (MQ=255)                                          aCGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCACCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGc                                                                                                 >  7:252528/1‑145 (MQ=255)                                            gcgcCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGAt                                                                                            >  6:319186/1‑148 (MQ=255)                                            gcgcCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGAt                                                                                            >  4:111586/1‑148 (MQ=255)                                                cAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGa                                                                                             >  6:113682/1‑143 (MQ=255)                                                cAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGa                                                                                             <  5:113682/143‑1 (MQ=255)                                                cAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTg                                                                                       <  5:158363/149‑1 (MQ=255)                                                          cGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGc                                                                                                                                             >  4:72966/1‑85 (MQ=255)                                                           gggTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGc                                                                             >  6:326753/1‑148 (MQ=255)                                                              tcctcgcacacggtcggcgacaagtatgtcgaggcggccggctttgccggcttgccactgatcttgccggcCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCaa                                                                                               >  3:82844‑M1/72‑127 (MQ=255)                                                              tcctcgcacacggtcggcgacaagtatgtcgaggcggccggctttgccggcttgccactgatcttgccggcCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCaa                                                                                               <  4:82844‑M1/56‑1 (MQ=255)                                                                 ccGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAgccg                                                                      >  7:101995/1‑149 (MQ=255)                                                                 ccGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAgccg                                                                      <  6:205280/149‑1 (MQ=255)                                                                     cacaCTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGACGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCTTTgccggctt                                                                  <  5:280649/149‑3 (MQ=255)                                                                            ggggggCCCTTGTAATGATGCGGGTCGATTTTTGAAGGGGAGCCGGTAAAACCAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGa                                                            <  4:235319/148‑1 (MQ=255)                                                                                 gcCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTc                                                              <  1:109230/141‑1 (MQ=255)                                                                                 gcCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTc                                                              >  2:109230/1‑141 (MQ=255)                                                                                 gcCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACt                                                      >  1:304621/1‑149 (MQ=255)                                                                                         aaTGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGcc                                               >  6:83832/1‑148 (MQ=255)                                                                                             atgCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCg                                          >  1:39922/1‑149 (MQ=255)                                                                                                cGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCgtgt                                       <  2:39922/149‑1 (MQ=255)                                                                                                cGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCgtgt                                       <  8:252528/149‑1 (MQ=255)                                                                                                    tCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATAc                                                       >  5:171316/1‑129 (MQ=255)                                                                                                    tCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATAc                                                       <  6:171316/129‑1 (MQ=255)                                                                                                    tCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGc                                     >  5:146985/1‑147 (MQ=255)                                                                                                      gctttgccggcttgccactgatcttgccggcCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCg                                                                                                   <  2:312240‑M1/52‑1 (MQ=255)                                                                                                      gATATTTGAAGGCGAGCCGGTAAACACAATGCCGGGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgagg                                 <  7:236555/149‑1 (MQ=255)                                                                                                      gATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgag                                  <  5:326753/148‑1 (MQ=255)                                                                                                         atTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGt                              >  4:127143/1‑149 (MQ=255)                                                                                                              aaGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGttcttc                         <  8:101995/149‑1 (MQ=255)                                                                                                                 gCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgag                                  >  4:131458/1‑137 (MQ=255)                                                                                                                 gCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgag                                  <  3:131458/137‑1 (MQ=255)                                                                                                                 gCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCt                      <  2:304621/149‑1 (MQ=255)                                                                                                                       cGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTAc                    <  4:37029/145‑1 (MQ=255)                                                                                                                       cGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTAc                    >  3:37029/1‑145 (MQ=255)                                                                                                                       cGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACctgc                >  5:280071/1‑149 (MQ=255)                                                                                                                       cGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACctgc                <  3:111586/149‑1 (MQ=255)                                                                                                                         gTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACctgct               >  8:274923/1‑148 (MQ=255)                                                                                                                           aaaaaCAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGAc            >  5:329124/1‑149 (MQ=255)                                                                                                                             aaaCAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACgg          <  6:146985/149‑1 (MQ=255)                                                                                                                                     CCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCt  >  6:280071‑M1/1‑149 (MQ=255)                                                                                                                                     |                                                                                                                                                     ACGGCAATGGCTGCCTGCAACAGCGGCAGGGTCAGGCGATCACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCAAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCT  >  NC_002947/6045797‑6046077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.