New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6045929 =	44 (0.830)	3 (0.060)	3/244	NT	6.1%	coding (182/768 nt)	PP_5298	glutamine amidotransferase
	?	NC_002947	6045977 =	50 (0.990)					coding (134/768 nt)	PP_5298	glutamine amidotransferase

ACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATCAAAGGGACCGCATTTGCGCTCATGGGCT  >  NC_002947/6045838‑6046115                                                                                                                                            |                                                                                                                                            aCGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCACCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGc                                                                                                                                        >  7:252528/1‑145 (MQ=255)   gcgcCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGAt                                                                                                                                   >  4:111586/1‑148 (MQ=255)   gcgcCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGAt                                                                                                                                   >  6:319186/1‑148 (MQ=255)       cAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGa                                                                                                                                    >  6:113682/1‑143 (MQ=255)       cAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGa                                                                                                                                    <  5:113682/143‑1 (MQ=255)       cAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTg                                                                                                                              <  5:158363/149‑1 (MQ=255)                  gggTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGc                                                                                                                   >  6:326753/1‑148 (MQ=255)                     tcctcgcacacggtcggcgacaagtatgtcgaggcggccggctttgccggcttgccactgatcttgccggcCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCaa                                                                                                                                      >  3:82844‑M1/72‑127 (MQ=255)                     tcctcgcacacggtcggcgacaagtatgtcgaggcggccggctttgccggcttgccactgatcttgccggcCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCaa                                                                                                                                      <  4:82844‑M1/56‑1 (MQ=255)                        ccGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAgccg                                                                                                            >  7:101995/1‑149 (MQ=255)                        ccGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAgccg                                                                                                            <  6:205280/149‑1 (MQ=255)                            cacaCTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGACGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCTTTgccggctt                                                                                                        <  5:280649/149‑3 (MQ=255)                                   ggggggCCCTTGTAATGATGCGGGTCGATTTTTGAAGGGGAGCCGGTAAAACCAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGa                                                                                                  <  4:235319/148‑1 (MQ=255)                                        gcCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTc                                                                                                    >  2:109230/1‑141 (MQ=255)                                        gcCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTc                                                                                                    <  1:109230/141‑1 (MQ=255)                                        gcCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACt                                                                                            >  1:304621/1‑149 (MQ=255)                                                aaTGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGcc                                                                                     >  6:83832/1‑148 (MQ=255)                                                    atgCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCg                                                                                >  1:39922/1‑149 (MQ=255)                                                       cGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCgtgt                                                                             <  8:252528/149‑1 (MQ=255)                                                       cGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCgtgt                                                                             <  2:39922/149‑1 (MQ=255)                                                           tCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATAc                                                                                             <  6:171316/129‑1 (MQ=255)                                                           tCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATAc                                                                                             >  5:171316/1‑129 (MQ=255)                                                           tCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGc                                                                           >  5:146985/1‑147 (MQ=255)                                                             gctttgccggcttgccactgatcttgccggcCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCg                                                                                                                                          <  2:312240‑M1/52‑1 (MQ=255)                                                             gATATTTGAAGGCGAGCCGGTAAACACAATGCCGGGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgagg                                                                       <  7:236555/149‑1 (MQ=255)                                                             gATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgag                                                                        <  5:326753/148‑1 (MQ=255)                                                                atTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGt                                                                    >  4:127143/1‑149 (MQ=255)                                                                     aaGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGttcttc                                                               <  8:101995/149‑1 (MQ=255)                                                                        gCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgag                                                                        <  3:131458/137‑1 (MQ=255)                                                                        gCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgag                                                                        >  4:131458/1‑137 (MQ=255)                                                                        gCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCt                                                            <  2:304621/149‑1 (MQ=255)                                                                              cGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTAc                                                          >  3:37029/1‑145 (MQ=255)                                                                              cGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTAc                                                          <  4:37029/145‑1 (MQ=255)                                                                              cGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACctgc                                                      >  5:280071/1‑149 (MQ=255)                                                                              cGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACctgc                                                      <  3:111586/149‑1 (MQ=255)                                                                                gTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACctgct                                                     >  8:274923/1‑148 (MQ=255)                                                                                  aaaaaCAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGAc                                                  >  5:329124/1‑149 (MQ=255)                                                                                    ttgccggcccgtgatggcggcagcgacacgcaagcgctgctggctcgcctgcacggGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgagga                                                                      <  4:82844‑M2/71‑1 (MQ=255)                                                                                    ttgccggcccgtgatggcggcagcgacacgcaagcgctgctggctcgcctgcacggGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCgagga                                                                      >  3:82844‑M2/57‑127 (MQ=255)                                                                                    aaaCAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACgg                                                <  6:146985/149‑1 (MQ=255)                                                                                        cggcccgtgatggcggcagcgacacgcaagcgctgctggctcgcctgcacggGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAgc                                                                                                              <  2:312240‑M2/31‑1 (MQ=255)                                                                                            CCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCt                                        >  6:280071‑M1/1‑149 (MQ=255)                                                                                             CGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCt                                        <  2:280539‑M1/148‑1 (MQ=255)                                                                                                  aGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATAc                                                                                             <  1:20611/90‑1 (MQ=255)                                                                                                  aGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATAc                                                                                             >  2:239431/1‑90 (MQ=255)                                                                                                  aGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATAc                                                                                             >  2:20611/1‑90 (MQ=255)                                                                                                  aGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATAc                                                                                             <  1:239431/90‑1 (MQ=255)                                                                                                     cGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGAt                               <  3:127143/149‑1 (MQ=255)                                                                                                       aGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACAcc                                  <  7:70978/144‑1 (MQ=255)                                                                                                       aGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACAcc                                  >  8:70978/1‑144 (MQ=255)                                                                                                       aGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATc                              >  8:95777/1‑148 (MQ=255)                                                                                                           agcagcGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATCAAAgg                         >  4:69867/1‑149 (MQ=255)                                                                                                               gcgcTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATCAAAGGGAcc                     <  7:274923/149‑1 (MQ=255)                                                                                                                   ttGCGTGTCGCTCCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGAGTGCGAGCAGTTCTTCCCTACCTGCTGACGTCAGGCGCTCACACCGATCAAACGGACCGCAt                 >  8:283578/1‑149 (MQ=255)                                                                                                                      cGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATCAAAGGGACCGCAttt               <  5:83832/148‑1 (MQ=255)                                                                                                                            gCTGCCGCCATCACGGGCCGGCAAGATCAGTGGCTAAGCCGGCAAAGCCGGCCTCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATCAAAGGGACCGCATTTGCGCt          >  1:223364/1‑148 (MQ=255)                                                                                                                                ccgccATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATCAAAGGGACCGCATTTGCGCTCATggg    >  4:126650/1‑149 (MQ=255)                                                                                                                                 cgccATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCTCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATCAAAGGGACCGCATTTGCGCTCATGGGc   <  2:223364/149‑1 (MQ=255)                                                                                                                                  gccATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATCAAAGGGACCGCATTTGCGCTCATGGGCt  <  6:329124/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                            ACGCGCCAGATCATGCCGGGTACCCGCCACACTGGGGGCGCCATTGTAATGATGCGGCTCGATATTTGAAGGCGAGCCGGTAAAAACAATGCCGTGCAGGCGAGCCAGCAGCGCTTGCGTGTCGCTGCCGCCATCACGGGCCGGCAAGATCAGTGGC‑AAGCCGGCAAAGCCGGCCGCCTCGACATACTTGTCGCCGACCGTGTGCGAGGAGTTCTTCCCTACCTGCTGACGGCAGGCGCTGACACCGATCAAAGGGACCGCATTTGCGCTCATGGGCT  >  NC_002947/6045838‑6046115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.