New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6055409 =	48 (0.910)	4 (0.080)	4/238	NT	9.1%	coding (362/732 nt)	tonB	TonB energy transducing system subunit TonB
	?	NC_002947	6055475 =	35 (0.710)					coding (428/732 nt)	tonB	TonB energy transducing system subunit TonB

GAGGAACCACCGTTGCCGAAGCTGGCAGAAGCGCCCAAGCCCAAGATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGCCAAGTACAAGCGTTACCCGGAAGAC  >  NC_002947/6055261‑6055548                                                                                                                                                     |                                                                                                                                            tacgacacgaccttgccttcggcgtcgaccacgaagcgtaggcggttcatgccttgcaggccgcgacggcgcgcgtcttccgggtaacgcttgtacttggcaaggtggcgcagcaggtcgctctgccaggttggcaaggcgttgctgtt                                                                                                                                             >  6:288369‑M1/149‑149 (MQ=255)  acgacacgaccttgccttcggcgtcgaccacgaagcgtaggcggttcatgccttgcaggccgcgacggcgcgcgtcttccgggtaacgcttgtacttggcaaggtggcgcagcaggtcgctctgccaggttggcaaggcgttgctgtt                                                                                                                                             >  3:265580‑M1/148‑148 (MQ=255)       acgaccttgccttcggcgtcgaccacgaagcgtaggcggttcatgccttgcaggccgcgacggcgcgcgtcttccgggtaacgcttgtacttggcaaggtggcgcagcaggtcgctctgccaggttggcaaggcgttgctgtTGGACg                                                                                                                                        <  5:310684‑M1/6‑1 (MQ=255)         accggggCCGAAGCTGGTAGAAGCGCCCAAGCCCAAGATCCCCATCCCCAAGCCGCCCACGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGCGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCAc                                                                                                                                     <  6:102942/143‑1 (MQ=255)                       tGGCAGAAGCGCCCAAGCCCAAGATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCg                                                                                                                       >  3:260385/1‑149 (MQ=255)                         gCAGAAGCGCCCAAGCCCAAGATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGc                                                                                                                      >  3:52821/1‑148 (MQ=255)                         gCAGAAGCGCCAAAGCCCAAGATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCCCCGAGCAAACGGTGGACGCCCCGCGCAGCAACTCGcc                                                                                                                     >  8:276080/1‑149 (MQ=255)                           aGAAGCGCCCAAGCCCAAGATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCAc                                                                                                                   >  2:174185/1‑149 (MQ=255)                           aGAAGCGCCCAAGCCAAAGATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCAGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCAc                                                                                                                   >  7:328769/1‑149 (MQ=255)                                  cccaagcccaagATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGaa                                                                                                            <  1:136216/149‑1 (MQ=255)                                         ccaagATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCcgcg                                                                                                     >  8:310378/1‑149 (MQ=255)                                          caagATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGcgg                                                                                                    >  7:205288/1‑149 (MQ=255)                                               tCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGcggcaccg                                                                                               <  1:174185/149‑1 (MQ=255)                                                 gCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGcggcaccgg                                                                                              <  4:52821/148‑1 (MQ=255)                                                   cATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGcggcaccggcac                                                                                           <  7:310378/149‑1 (MQ=255)                                                      ccccAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCAGAGCCGCCGAACGAAGCACCCCCCACCGAGCAAACGGTGGCCGCACCGCCCACCAACACGCCCCCGCAGAAGTCCGCGGCACCGGCACCGa                                                                                        >  3:222373/1‑149 (MQ=255)                                                            gccgcgacggcgcgcgtcttccgggtaacgcttgtacttggcaaggtggcgcagcaggtcgctctgccaggttggcaaggcgttgctgtTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTg                                                                                  <  4:96092‑M1/60‑1 (MQ=255)                                                                 ccaagccgAAGGCCAAGAACCAGCCGCCCAAGCCCGAG‑AAAAGCATGAGCAGCAGAAGGAAGCACCGCACACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTcc                                                                             >  3:142760/1‑148 (MQ=255)                                                                 caaagccgAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTc                                                                              >  8:130994/3‑148 (MQ=255)                                                                     gcgcgcgtcttccgggtaacgcttgtacttggcaaggtggcgcagcaggtcgctctgccaggttggcaaggcgttgctgtTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACa                                                                         >  3:96092‑M1/81‑149 (MQ=255)                                                                        gAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGc                                                                       >  3:215406/1‑148 (MQ=255)                                                                              cAAGCCCCAGCCGCCAAAGCCCGAGAAAAAGCCTGAGCCGCATAAGGAAGAACCGCCAAACGAGAAAACGGTGGACGCACCGACCAGCAACTAGCCACCGCATAAGTCCGCGTCACCGGCAACGAGCATTGCGTCAAACAGCaaagact                                                                >  8:16537/1‑144 (MQ=255)                                                                               aaGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCtt                                                               >  6:310684/1‑149 (MQ=255)                                                                                aGCCCCAGCCGCCCAAGCCCGATAAAAAGCCTGAGCCGCCGAAGTAAGCACCGCCCACCGAGCAAACGTTGGACGCAACGCCCACCAACTCGCCAACGCAGAAGTCCTCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTg                                                              <  7:16537/149‑1 (MQ=255)                                                                                aGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTg                                                              >  1:170723/1‑149 (MQ=255)                                                                                 gCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTc                                                                                                                        >  1:284954/1‑90 (MQ=255)                                                                                 gCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTc                                                                                                                        <  2:284954/90‑1 (MQ=255)                                                                                   cccAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGt                                                                               <  3:108705/129‑1 (MQ=255)                                                                                   cccAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGt                                                                               >  4:108705/1‑129 (MQ=255)                                                                                    ccAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCAACGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCaa                                                          >  6:41467/1‑149 (MQ=255)                                                                                         cgccCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTgg                                                     <  4:260385/149‑1 (MQ=255)                                                                                            ccAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCtt                                                               <  4:127276/136‑1 (MQ=255)                                                                                            ccAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCtt                                                               >  3:127276/1‑136 (MQ=255)                                                                                                  ccGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGAc                                            >  4:275347/1‑149 (MQ=255)                                                                                                  ccGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGAc                                            >  6:204335/1‑149 (MQ=255)                                                                                                         gtggcgcagcaggtcgctctgccaggttggcaaggcgttgctgtTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTc                                                                              <  8:297191‑M1/64‑1 (MQ=255)                                                                                                         gtggcgcagcaggtcgctctgccaggttggcaaggcgttgctgtTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTc                                                                              >  7:297191‑M1/45‑108 (MQ=255)                                                                                                         aaaGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCtgctgc                                     >  3:192063/1‑149 (MQ=255)                                                                                                            gCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACctgct                                       >  8:85958/1‑144 (MQ=255)                                                                                                            gCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACctgct                                       <  7:85958/144‑1 (MQ=255)                                                                                                                 aGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCtt                             <  7:276080/149‑1 (MQ=255)                                                                                                                    cgccgAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCAtt                                                                                   >  8:269947/1‑92 (MQ=255)                                                                                                                    cgccgAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGcc                          <  8:205288/149‑1 (MQ=255)                                                                                                                      ccgAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGcc                          >  8:305192/1‑147 (MQ=255)                                                                                                                      ccgAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGCCaa                        <  4:215406/149‑1 (MQ=255)                                                                                                                            gaagCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCAACGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGCCAAGTACaa                  <  5:41467/149‑1 (MQ=255)                                                                                                                              agCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGCCAAGTACAAGc                >  3:123810/1‑149 (MQ=255)                                                                                                                              agCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGCCAAGTACAAGc                <  4:192063/149‑1 (MQ=255)                                                                                                                                   cGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGCCAAGTACAAGCGTTAc           <  3:275347/149‑1 (MQ=255)                                                                                                                                    gCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCtgctgc                                     <  6:293795/122‑1 (MQ=255)                                                                                                                                    gCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCtgctgc                                     >  5:293795/1‑122 (MQ=255)                                                                                                                                     cccACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGcc                          >  3:219936/1‑132 (MQ=255)                                                                                                                                     cccACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGcc                          <  4:219936/132‑1 (MQ=255)                                                                                                                                         ccGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGCCAAGTACAAGCGTTACCCGGaa     <  7:305192/149‑1 (MQ=255)                                                                                                                                            aGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGCCAAGTACAAGCGTTACCCGGAAGAc  <  7:130994/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                            GAGGAACCACCGTTGCCGAAGCTGGCAGAAGCGCCCAAGCCCAAGATCGCCATCCCCAAGCCGCCCAAGCCGAAGGCCAAGCCCCAGCCGCCCAAGCCCGAGAAAAAGCCTGAGCCGCCGAAGGAAGCACCGCCCACCGAGCAAACGGTGGACGCACCGCCCAGCAACTCGCCACCGCAGAAGTCCGCGGCACCGGCACCGAGCATTGCGTCCAACAGCAACGCCTTGCCAACCTGGCAGAGCGACCTGCTGCGCCACCTTGCCAAGTACAAGCGTTACCCGGAAGAC  >  NC_002947/6055261‑6055548

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.