New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 6080834 | 46 (0.870) | 4 (0.080) | 4/246 | NT | 8.5% | coding (778/897 nt) | PP_5332 | hypothetical protein |
? | NC_002947 | = 6080867 | 42 (0.820) | coding (811/897 nt) | PP_5332 | hypothetical protein |
GATCTACCTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCG > NC_002947/6080692‑6080982 | gATCTACCTGACCACCCCGAAGACCATCAGCATCGTAGACCCGCATTGGAATCGGCTGATTACCTTGACCAGCAGCTGCTCGCGCTCGGCGCTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACAAGGCTGACgatg > 7:205283/1‑149 (MQ=255) tACCTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgatggatg > 7:146229/1‑149 (MQ=255) aCCTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGatggatgg > 4:190401/1‑149 (MQ=255) ccTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgatgg < 6:83606/144‑1 (MQ=255) gAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGc > 5:342226/1‑149 (MQ=255) ccGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCt < 3:190401/149‑1 (MQ=255) cAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCtgtg < 6:342226/149‑1 (MQ=255) aGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAc > 4:322714‑M2/1‑148 (MQ=255) gCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgatgg < 4:251972/121‑1 (MQ=255) gCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgatgg > 3:251972/1‑121 (MQ=255) tcgtcgACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAcagc < 5:314215‑M2/148‑5 (MQ=255) gtcgACCCTCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGa < 8:146229/148‑1 (MQ=255) cccGCATTGGAATCGGCGGATTAACTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATTGATGGCAGCg < 6:4994/120‑1 (MQ=255) ccGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGtctcgatgcacagcattcgctgccatccatcgtcagccat < 2:240671‑M1/143‑41 (MQ=255) ccGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGtctcgatgcacagcattcgctgccatccatcgtcagccat > 1:240671‑M1/1‑103 (MQ=255) aTTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgat < 5:276431/104‑1 (MQ=255) aTTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgat > 6:276431/1‑104 (MQ=255) ggAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg > 2:256711/1‑143 (MQ=255) ggAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg < 1:256711/143‑1 (MQ=255) tCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtgg > 6:4112/1‑149 (MQ=255) ggcggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtggtg < 5:4112/149‑1 (MQ=255) cggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtggtg > 6:233158/1‑147 (MQ=255) ggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAg < 6:314215/149‑1 (MQ=255) cTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGtctcgatgcacagcatttgctgccatccatcgtcagcc < 5:11002‑M1/118‑39 (MQ=255) cTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGtctcgatgcacagcattagctgccatccatcgtcagcc > 6:11002‑M1/1‑80 (MQ=255) agcagcGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGc < 7:17159/149‑1 (MQ=255) agcGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtg < 5:261758/126‑1 (MQ=255) agcGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtg > 6:261758/1‑126 (MQ=255) tCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg < 5:76317/111‑1 (MQ=255) tCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg > 6:76317/1‑111 (MQ=255) gcgcTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGc > 6:359642/1‑149 (MQ=255) cgcTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt > 8:120156/1‑149 (MQ=255) cgcTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTCCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt > 2:70920/1‑149 (MQ=255) cttgtgggTGATCTTGCACCCGGTGGA‑CGCTCGGGCCAATGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTgg < 3:343352/143‑1 (MQ=255) ggcggTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt < 1:230749/144‑1 (MQ=255) ggcggTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt > 2:230749/1‑144 (MQ=255) ggTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc < 5:359642/149‑1 (MQ=255) tCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTgg < 2:133183/121‑1 (MQ=255) tCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTgg > 1:133183/1‑121 (MQ=255) cTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGAt < 4:341650/147‑1 (MQ=255) cTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGAt > 3:341650/1‑147 (MQ=255) gAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCg < 1:70920/146‑1 (MQ=255) aaCCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTtg > 3:34081/1‑149 (MQ=255) ccc‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCa > 7:73094/1‑138 (MQ=255) ccc‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCa < 8:73094/138‑1 (MQ=255) ccc‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTtgt > 7:295466/1‑148 (MQ=255) cc‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTTGTGGAGTTGAAGCCTGTGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGa < 6:332026/149‑1 (MQ=255) ccGAGCGGGCCAAGTATCTGGCTGACATGGCTGACGATGGATGGCAGCGAAGGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTg < 8:215699/122‑1 (MQ=255) cGAGCGGGCAAAGTAGCTGGCGGACATGGCTGACGATGGATGTCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGCTGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTTTGAAAATATCt < 6:275106/149‑1 (MQ=255) aGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc < 6:6123/126‑1 (MQ=255) aGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc > 5:6123/1‑126 (MQ=255) cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCgg > 8:8938/1‑126 (MQ=255) cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGc > 2:270698/1‑149 (MQ=255) cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTAGCTGGGCGTCCAGATCGGTTGTGAAAATATCATAGCCCTGc > 8:226898/1‑149 (MQ=255) aTGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgg < 2:240671‑M2/143‑104 (MQ=255) aTGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgg > 1:240671‑M2/1‑40 (MQ=255) ggCTGACGATGGATGGCAGCTAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaag > 6:11002‑M2/1‑38 (MQ=255) ggCTGACGATGGATGGCAGCAAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaag < 5:11002‑M2/118‑81 (MQ=255) gCTGtctcgatgcacagcattcgctgccatccatcgtcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgggtcgacga < 5:314215‑M1/148‑145 (MQ=255) tGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTc > 3:53462/1‑149 (MQ=255) gtctcgatgcacagcattcgctgccatccatcgtcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgggtcgacgatgct > 4:322714‑M1/1‑1 (MQ=255) | GATCTACCTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCG > NC_002947/6080692‑6080982 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |