New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 608083446 (0.870)4 (0.080) 4/246 NT 8.5% coding (778/897 nt) PP_5332 hypothetical protein
?NC_002947 = 6080867 42 (0.820)coding (811/897 nt) PP_5332 hypothetical protein

GATCTACCTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCG  >  NC_002947/6080692‑6080982
                                                                                                                                               |                                                                                                                                                    
gATCTACCTGACCACCCCGAAGACCATCAGCATCGTAGACCCGCATTGGAATCGGCTGATTACCTTGACCAGCAGCTGCTCGCGCTCGGCGCTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACAAGGCTGACgatg                                                                                                                                                >  7:205283/1‑149 (MQ=255)
    tACCTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgatggatg                                                                                                                                            >  7:146229/1‑149 (MQ=255)
     aCCTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGatggatgg                                                                                                                                           >  4:190401/1‑149 (MQ=255)
      ccTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgatgg                                                                                                                                               <  6:83606/144‑1 (MQ=255)
         gAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGc                                                                                                                                       >  5:342226/1‑149 (MQ=255)
                ccGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCt                                                                                                                                <  3:190401/149‑1 (MQ=255)
                   cAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCtgtg                                                                                                                             <  6:342226/149‑1 (MQ=255)
                            aGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAc                                                                                                                    >  4:322714‑M2/1‑148 (MQ=255)
                             gCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgatgg                                                                                                                                               <  4:251972/121‑1 (MQ=255)
                             gCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgatgg                                                                                                                                               >  3:251972/1‑121 (MQ=255)
                                tcgtcgACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAcagc                                                                                                                 <  5:314215‑M2/148‑5 (MQ=255)
                                  gtcgACCCTCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGa                                                                                                               <  8:146229/148‑1 (MQ=255)
                                       cccGCATTGGAATCGGCGGATTAACTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATTGATGGCAGCg                                                                                                                                      <  6:4994/120‑1 (MQ=255)
                                        ccGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGtctcgatgcacagcattcgctgccatccatcgtcagccat                                                                                                              <  2:240671‑M1/143‑41 (MQ=255)
                                        ccGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGtctcgatgcacagcattcgctgccatccatcgtcagccat                                                                                                              >  1:240671‑M1/1‑103 (MQ=255)
                                            aTTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgat                                                                                                                                                 <  5:276431/104‑1 (MQ=255)
                                            aTTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACgat                                                                                                                                                 >  6:276431/1‑104 (MQ=255)
                                               ggAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                       >  2:256711/1‑143 (MQ=255)
                                               ggAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                       <  1:256711/143‑1 (MQ=255)
                                                   tCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtgg                                                                                             >  6:4112/1‑149 (MQ=255)
                                                     ggcggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtggtg                                                                                           <  5:4112/149‑1 (MQ=255)
                                                       cggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtggtg                                                                                           >  6:233158/1‑147 (MQ=255)
                                                        ggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAg                                                                                        <  6:314215/149‑1 (MQ=255)
                                                               cTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGtctcgatgcacagcatttgctgccatccatcgtcagcc                                                                                                                <  5:11002‑M1/118‑39 (MQ=255)
                                                               cTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGtctcgatgcacagcattagctgccatccatcgtcagcc                                                                                                                >  6:11002‑M1/1‑80 (MQ=255)
                                                                      agcagcGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGc                                                                          <  7:17159/149‑1 (MQ=255)
                                                                         agcGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtg                                                                                              <  5:261758/126‑1 (MQ=255)
                                                                         agcGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtg                                                                                              >  6:261758/1‑126 (MQ=255)
                                                                               tCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                       <  5:76317/111‑1 (MQ=255)
                                                                               tCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                       >  6:76317/1‑111 (MQ=255)
                                                                                 gcgcTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGc                                                               >  6:359642/1‑149 (MQ=255)
                                                                                  cgcTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt                                                              >  8:120156/1‑149 (MQ=255)
                                                                                  cgcTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTCCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt                                                              >  2:70920/1‑149 (MQ=255)
                                                                                    cttgtgggTGATCTTGCACCCGGTGGACGCTCGGGCCAATGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTgg                                                            <  3:343352/143‑1 (MQ=255)
                                                                                       ggcggTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt                                                              <  1:230749/144‑1 (MQ=255)
                                                                                       ggcggTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt                                                              >  2:230749/1‑144 (MQ=255)
                                                                                          ggTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc                                                      <  5:359642/149‑1 (MQ=255)
                                                                                               tCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTgg                                                                             <  2:133183/121‑1 (MQ=255)
                                                                                               tCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTgg                                                                             >  1:133183/1‑121 (MQ=255)
                                                                                                cTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGAt                                                  <  4:341650/147‑1 (MQ=255)
                                                                                                cTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGAt                                                  >  3:341650/1‑147 (MQ=255)
                                                                                                   gAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCg                                                <  1:70920/146‑1 (MQ=255)
                                                                                                    aaCCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTtg                                            >  3:34081/1‑149 (MQ=255)
                                                                                                      cccGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCa                                                     >  7:73094/1‑138 (MQ=255)
                                                                                                      cccGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCa                                                     <  8:73094/138‑1 (MQ=255)
                                                                                                      cccGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTtgt                                           >  7:295466/1‑148 (MQ=255)
                                                                                                       ccGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTTGTGGAGTTGAAGCCTGTGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGa                                         <  6:332026/149‑1 (MQ=255)
                                                                                                               ccGAGCGGGCCAAGTATCTGGCTGACATGGCTGACGATGGATGGCAGCGAAGGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTg                                                             <  8:215699/122‑1 (MQ=255)
                                                                                                                cGAGCGGGCAAAGTAGCTGGCGGACATGGCTGACGATGGATGTCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGCTGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTTTGAAAATATCt                                 <  6:275106/149‑1 (MQ=255)
                                                                                                                  aGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc                                                      <  6:6123/126‑1 (MQ=255)
                                                                                                                  aGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc                                                      >  5:6123/1‑126 (MQ=255)
                                                                                                                         cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCgg                                               >  8:8938/1‑126 (MQ=255)
                                                                                                                         cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGc                        >  2:270698/1‑149 (MQ=255)
                                                                                                                         cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTAGCTGGGCGTCCAGATCGGTTGTGAAAATATCATAGCCCTGc                        >  8:226898/1‑149 (MQ=255)
                                                                                                                                         aTGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgg              <  2:240671‑M2/143‑104 (MQ=255)
                                                                                                                                         aTGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgg              >  1:240671‑M2/1‑40 (MQ=255)
                                                                                                                                           ggCTGACGATGGATGGCAGCTAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaag                                     >  6:11002‑M2/1‑38 (MQ=255)
                                                                                                                                           ggCTGACGATGGATGGCAGCAAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaag                                     <  5:11002‑M2/118‑81 (MQ=255)
                                                                                                                                            gCTGtctcgatgcacagcattcgctgccatccatcgtcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgggtcgacga      <  5:314215‑M1/148‑145 (MQ=255)
                                                                                                                                              tGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTc   >  3:53462/1‑149 (MQ=255)
                                                                                                                                               gtctcgatgcacagcattcgctgccatccatcgtcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgggtcgacgatgct  >  4:322714‑M1/1‑1 (MQ=255)
                                                                                                                                               |                                                                                                                                                    
GATCTACCTGAACACCCCGCAGACCCTCAGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCCGTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCG  >  NC_002947/6080692‑6080982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.