New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6080834	46 (0.870)	4 (0.080)	4/246	NT	8.5%	coding (778/897 nt)	PP_5332	hypothetical protein
	?	NC_002947	= 6080867	42 (0.820)					coding (811/897 nt)	PP_5332	hypothetical protein

AGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGG  >  NC_002947/6080720‑6081007                                                                                                                                                     |                                                                                                                                             aGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAc                                                                                                                                             >  4:322714‑M2/1‑148 (MQ=255)     tcgtcgACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAcagc                                                                                                                                          <  5:314215‑M2/148‑5 (MQ=255)       gtcgACCCTCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGa                                                                                                                                        <  8:146229/148‑1 (MQ=255)                    ggAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                                                <  1:256711/143‑1 (MQ=255)                    ggAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                                                >  2:256711/1‑143 (MQ=255)                        tCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtgg                                                                                                                      >  6:4112/1‑149 (MQ=255)                          ggcggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtggtg                                                                                                                    <  5:4112/149‑1 (MQ=255)                            cggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtggtg                                                                                                                    >  6:233158/1‑147 (MQ=255)                             ggATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAg                                                                                                                 <  6:314215/149‑1 (MQ=255)                                           agcagcGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGc                                                                                                   <  7:17159/149‑1 (MQ=255)                                              agcGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtg                                                                                                                       <  5:261758/126‑1 (MQ=255)                                              agcGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCtg                                                                                                                       >  6:261758/1‑126 (MQ=255)                                                    tCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                                                >  6:76317/1‑111 (MQ=255)                                                    tCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTgg                                                                                                                                <  5:76317/111‑1 (MQ=255)                                                      gcgcTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGc                                                                                        >  6:359642/1‑149 (MQ=255)                                                       cgcTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt                                                                                       >  8:120156/1‑149 (MQ=255)                                                       cgcTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTCCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt                                                                                       >  2:70920/1‑149 (MQ=255)                                                         cttgtgggTGATCTTGCACCCGGTGGA‑CGCTCGGGCCAATGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTgg                                                                                     <  3:343352/143‑1 (MQ=255)                                                            ggcggTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt                                                                                       >  2:230749/1‑144 (MQ=255)                                                            ggcggTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCt                                                                                       <  1:230749/144‑1 (MQ=255)                                                               ggTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc                                                                               <  5:359642/149‑1 (MQ=255)                                                                    tCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTgg                                                                                                      >  1:133183/1‑121 (MQ=255)                                                                    tCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTgg                                                                                                      <  2:133183/121‑1 (MQ=255)                                                                     cTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGAt                                                                           <  4:341650/147‑1 (MQ=255)                                                                     cTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGAt                                                                           >  3:341650/1‑147 (MQ=255)                                                                        gAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCg                                                                         <  1:70920/146‑1 (MQ=255)                                                                         aaCCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTtg                                                                     >  3:34081/1‑149 (MQ=255)                                                                           ccc‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCa                                                                              <  8:73094/138‑1 (MQ=255)                                                                           ccc‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCa                                                                              >  7:73094/1‑138 (MQ=255)                                                                           ccc‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTtgt                                                                    >  7:295466/1‑148 (MQ=255)                                                                            cc‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTTGTGGAGTTGAAGCCTGTGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGa                                                                  <  6:332026/149‑1 (MQ=255)                                                                                    ccGAGCGGGCCAAGTATCTGGCTGACATGGCTGACGATGGATGGCAGCGAAGGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTg                                                                                      <  8:215699/122‑1 (MQ=255)                                                                                     cGAGCGGGCAAAGTAGCTGGCGGACATGGCTGACGATGGATGTCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGCTGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTTTGAAAATATCt                                                          <  6:275106/149‑1 (MQ=255)                                                                                       aGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc                                                                               >  5:6123/1‑126 (MQ=255)                                                                                       aGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTcc                                                                               <  6:6123/126‑1 (MQ=255)                                                                                              cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCgg                                                                        >  8:8938/1‑126 (MQ=255)                                                                                              cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGc                                                 >  2:270698/1‑149 (MQ=255)                                                                                              cAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTAGCTGGGCGTCCAGATCGGTTGTGAAAATATCATAGCCCTGc                                                 >  8:226898/1‑149 (MQ=255)                                                                                                              aTGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgg                                       <  2:240671‑M2/143‑104 (MQ=255)                                                                                                              aTGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaaggtaatccgccgattccaatgcgg                                       >  1:240671‑M2/1‑40 (MQ=255)                                                                                                                ggCTGACGATGGATGGCAGCTAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaag                                                              >  6:11002‑M2/1‑38 (MQ=255)                                                                                                                ggCTGACGATGGATGGCAGCAAATGCTGTGCATCGAGAcagccatgtccgccagctccttggcccgctcggtccacgggttccagatcaccgccgagcgcgagccgctgctggtcaag                                                              <  5:11002‑M2/118‑81 (MQ=255)                                                                                                                   tGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTc                            >  3:53462/1‑149 (MQ=255)                                                                                                                       gatggatgGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGTTGGAGTTGTAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCt                                                          <  7:149989/115‑1 (MQ=255)                                                                                                                       gatggatgGCAGCGAATGCTGTGCATCGAGAAAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGAATGGCTCGAGTCATTCGCTGGGCGTCCAGATCGGATGTGAAAATATCt                                                          >  8:149989/1‑115 (MQ=255)                                                                                                                           gatggCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGcaa                    <  4:53462/149‑3 (MQ=255)                                                                                                                           gatcgCAGCGAATGCTGGGCATCGAGAGAGCGAATGTGGGGGAGGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGTTCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGcaa                    <  1:258510/149‑3 (MQ=255)                                                                                                                                      aTGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCAAGCCCGCGAaga         <  5:233158/149‑1 (MQ=255)                                                                                                                                            tgCATCGTGACAGGGTATGTGTGGGTTGTCCTGGTGGAGTTGTAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCAAGCCCGCGAag          <  4:342122/142‑1 (MQ=255)                                                                                                                                              aatggagaCAGCTAATGTGTGGGATGACCTGGTGGAGTTGCAGCCTGGGGCGAGTCATTCGCGGGGCGTCCAGATCGTTTGTTAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCggg  <  4:34081/144‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             AGCATCGTCGACCCGCATTGGAATCGGCGGATTACCTTGACCAGCAGCGGCTCGCGCTCGGCGGTGATCTGGAACCC‑GTGGACCGAGCGGGCCAAGGAGCTGGCGGACATGGCTGACGATGGATGGCAGCGAATGCTGTGCATCGAGACAGCGAATGTGTGGGATGACCTGGTGGAGTTGAAGCCTGGGGCGAGTCATTCGCTGGGCGTCCAGATCGGTTGTGAAAATATCTGAGCCCTGCTCTTTTTTTACCGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCGGG  >  NC_002947/6080720‑6081007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.